BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

539 related articles for article (PubMed ID: 31359005)

  • 1. Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.
    Bertrand D; Shaw J; Kalathiyappan M; Ng AHQ; Kumar MS; Li C; Dvornicic M; Soldo JP; Koh JY; Tong C; Ng OT; Barkham T; Young B; Marimuthu K; Chng KR; Sikic M; Nagarajan N
    Nat Biotechnol; 2019 Aug; 37(8):937-944. PubMed ID: 31359005
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes.
    Brown CL; Keenum IM; Dai D; Zhang L; Vikesland PJ; Pruden A
    Sci Rep; 2021 Feb; 11(1):3753. PubMed ID: 33580146
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.
    Wang Z; Wang Y; Fuhrman JA; Sun F; Zhu S
    Brief Bioinform; 2020 May; 21(3):777-790. PubMed ID: 30860572
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.
    Yorki S; Shea T; Cuomo CA; Walker BJ; LaRocque RC; Manson AL; Earl AM; Worby CJ
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36804804
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Benchmarking genome assembly methods on metagenomic sequencing data.
    Zhang Z; Yang C; Veldsman WP; Fang X; Zhang L
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36917471
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assembly methods for nanopore-based metagenomic sequencing: a comparative study.
    Latorre-Pérez A; Villalba-Bermell P; Pascual J; Vilanova C
    Sci Rep; 2020 Aug; 10(1):13588. PubMed ID: 32788623
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Practical evaluation of 11 de novo assemblers in metagenome assembly.
    Forouzan E; Shariati P; Mousavi Maleki MS; Karkhane AA; Yakhchali B
    J Microbiol Methods; 2018 Aug; 151():99-105. PubMed ID: 29953874
    [TBL] [Abstract][Full Text] [Related]  

  • 9. InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
    Lai B; Wang F; Wang X; Duan L; Zhu H
    BMC Bioinformatics; 2015 Aug; 16():244. PubMed ID: 26250558
    [TBL] [Abstract][Full Text] [Related]  

  • 10. High-Resolution Metagenomics of Human Gut Microbiota Generated by Nanopore and Illumina Hybrid Metagenome Assembly.
    Ye L; Dong N; Xiong W; Li J; Li R; Heng H; Chan EWC; Chen S
    Front Microbiol; 2022; 13():801587. PubMed ID: 35633679
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Generation and application of pseudo-long reads for metagenome assembly.
    Sim M; Lee J; Wy S; Park N; Lee D; Kwon D; Kim J
    Gigascience; 2022 May; 11():. PubMed ID: 35579554
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Graph mining for next generation sequencing: leveraging the assembly graph for biological insights.
    Warnke-Sommer J; Ali H
    BMC Genomics; 2016 May; 17():340. PubMed ID: 27154001
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of de-novo assembly tools for plasmid metagenome analysis.
    Gupta SK; Raza S; Unno T
    Genes Genomics; 2019 Sep; 41(9):1077-1083. PubMed ID: 31187446
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
    Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
    BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evaluating
    Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
    Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
    Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
    Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
    Chen Z; Grim CJ; Ramachandran P; Meng J
    Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale.
    Zlitni S; Bishara A; Moss EL; Tkachenko E; Kang JB; Culver RN; Andermann TM; Weng Z; Wood C; Handy C; Ji HP; Batzoglou S; Bhatt AS
    Genome Med; 2020 May; 12(1):50. PubMed ID: 32471482
    [TBL] [Abstract][Full Text] [Related]  

  • 20. metaFlye: scalable long-read metagenome assembly using repeat graphs.
    Kolmogorov M; Bickhart DM; Behsaz B; Gurevich A; Rayko M; Shin SB; Kuhn K; Yuan J; Polevikov E; Smith TPL; Pevzner PA
    Nat Methods; 2020 Nov; 17(11):1103-1110. PubMed ID: 33020656
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 27.