These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Driven to near-experimental accuracy by refinement via molecular dynamics simulations. Heo L; Arbour CF; Feig M Proteins; 2019 Dec; 87(12):1263-1275. PubMed ID: 31197841 [TBL] [Abstract][Full Text] [Related]
4. Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning. Won J; Baek M; Monastyrskyy B; Kryshtafovych A; Seok C Proteins; 2019 Dec; 87(12):1351-1360. PubMed ID: 31436360 [TBL] [Abstract][Full Text] [Related]
5. Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences. Hura GL; Hodge CD; Rosenberg D; Guzenko D; Duarte JM; Monastyrskyy B; Grudinin S; Kryshtafovych A; Tainer JA; Fidelis K; Tsutakawa SE Proteins; 2019 Dec; 87(12):1298-1314. PubMed ID: 31589784 [TBL] [Abstract][Full Text] [Related]
6. A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments. Abriata LA; Tamò GE; Dal Peraro M Proteins; 2019 Dec; 87(12):1100-1112. PubMed ID: 31344267 [TBL] [Abstract][Full Text] [Related]
7. Assessment of protein assembly prediction in CASP13. Guzenko D; Lafita A; Monastyrskyy B; Kryshtafovych A; Duarte JM Proteins; 2019 Dec; 87(12):1190-1199. PubMed ID: 31374138 [TBL] [Abstract][Full Text] [Related]
8. Estimation of model accuracy in CASP13. Cheng J; Choe MH; Elofsson A; Han KS; Hou J; Maghrabi AHA; McGuffin LJ; Menéndez-Hurtado D; Olechnovič K; Schwede T; Studer G; Uziela K; Venclovas Č; Wallner B Proteins; 2019 Dec; 87(12):1361-1377. PubMed ID: 31265154 [TBL] [Abstract][Full Text] [Related]
9. Prediction of protein oligomer structures using GALAXY in CASP13. Baek M; Park T; Woo H; Seok C Proteins; 2019 Dec; 87(12):1233-1240. PubMed ID: 31509276 [TBL] [Abstract][Full Text] [Related]
10. Protein structure model refinement in CASP12 using short and long molecular dynamics simulations in implicit solvent. Terashi G; Kihara D Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):189-201. PubMed ID: 28833585 [TBL] [Abstract][Full Text] [Related]
11. Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in double-blind predictions during the CASP11 experiment. Khoury GA; Smadbeck J; Kieslich CA; Koskosidis AJ; Guzman YA; Tamamis P; Floudas CA Proteins; 2017 Jun; 85(6):1078-1098. PubMed ID: 28241391 [TBL] [Abstract][Full Text] [Related]
12. Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13. Karczyńska AS; Ziȩba K; Uciechowska U; Mozolewska MA; Krupa P; Lubecka EA; Lipska AG; Sikorska C; Samsonov SA; Sieradzan AK; Giełdoń A; Liwo A; Ślusarz R; Ślusarz M; Lee J; Joo K; Czaplewski C J Chem Inf Model; 2020 Mar; 60(3):1844-1864. PubMed ID: 31999919 [TBL] [Abstract][Full Text] [Related]
13. Using Local Protein Model Quality Estimates to Guide a Molecular Dynamics-Based Refinement Strategy. Adiyaman R; McGuffin LJ Methods Mol Biol; 2023; 2627():119-140. PubMed ID: 36959445 [TBL] [Abstract][Full Text] [Related]
14. Assessment of the model refinement category in CASP12. Hovan L; Oleinikovas V; Yalinca H; Kryshtafovych A; Saladino G; Gervasio FL Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):152-167. PubMed ID: 29071750 [TBL] [Abstract][Full Text] [Related]
15. Critical assessment of methods of protein structure prediction (CASP)-Round XIII. Kryshtafovych A; Schwede T; Topf M; Fidelis K; Moult J Proteins; 2019 Dec; 87(12):1011-1020. PubMed ID: 31589781 [TBL] [Abstract][Full Text] [Related]
16. Protein structure prediction using sparse NOE and RDC restraints with Rosetta in CASP13. Kuenze G; Meiler J Proteins; 2019 Dec; 87(12):1341-1350. PubMed ID: 31292988 [TBL] [Abstract][Full Text] [Related]
17. Selective refinement and selection of near-native models in protein structure prediction. Zhang J; Barz B; Zhang J; Xu D; Kosztin I Proteins; 2015 Oct; 83(10):1823-35. PubMed ID: 26214389 [TBL] [Abstract][Full Text] [Related]
18. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. Hou J; Wu T; Cao R; Cheng J Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027 [TBL] [Abstract][Full Text] [Related]
19. Evaluation of model refinement in CASP14. Simpkin AJ; Sánchez Rodríguez F; Mesdaghi S; Kryshtafovych A; Rigden DJ Proteins; 2021 Dec; 89(12):1852-1869. PubMed ID: 34288138 [TBL] [Abstract][Full Text] [Related]
20. High-accuracy refinement using Rosetta in CASP13. Park H; Lee GR; Kim DE; Anishchenko I; Cong Q; Baker D Proteins; 2019 Dec; 87(12):1276-1282. PubMed ID: 31325340 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]