BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

216 related articles for article (PubMed ID: 31370551)

  • 1. A hybrid, bottom-up, structurally accurate, Go¯-like coarse-grained protein model.
    Sanyal T; Mittal J; Shell MS
    J Chem Phys; 2019 Jul; 151(4):044111. PubMed ID: 31370551
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multiscale coarse-graining of the protein energy landscape.
    Hills RD; Lu L; Voth GA
    PLoS Comput Biol; 2010 Jun; 6(6):e1000827. PubMed ID: 20585614
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Balancing bond, nonbond, and gō-like terms in coarse grain simulations of conformational dynamics.
    Hills RD
    Methods Mol Biol; 2014; 1084():123-40. PubMed ID: 24061919
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Effects of lattice constraints in coarse-grained protein models.
    Farris ACK; Seaton DT; Landau DP
    J Chem Phys; 2021 Feb; 154(8):084903. PubMed ID: 33639740
    [TBL] [Abstract][Full Text] [Related]  

  • 5. HyRes: a coarse-grained model for multi-scale enhanced sampling of disordered protein conformations.
    Liu X; Chen J
    Phys Chem Chem Phys; 2017 Dec; 19(48):32421-32432. PubMed ID: 29186229
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Insights from coarse-grained Gō models for protein folding and dynamics.
    Hills RD; Brooks CL
    Int J Mol Sci; 2009 Mar; 10(3):889-905. PubMed ID: 19399227
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Coarse-grained peptide modeling using a systematic multiscale approach.
    Zhou J; Thorpe IF; Izvekov S; Voth GA
    Biophys J; 2007 Jun; 92(12):4289-303. PubMed ID: 17400700
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Coarse-Graining of TIP4P/2005, TIP4P-Ew, SPC/E, and TIP3P to Monatomic Anisotropic Water Models Using Relative Entropy Minimization.
    Lu J; Qiu Y; Baron R; Molinero V
    J Chem Theory Comput; 2014 Sep; 10(9):4104-20. PubMed ID: 26588552
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Further optimization of a hybrid united-atom and coarse-grained force field for folding simulations: Improved backbone hydration and interactions between charged side chains.
    Han W; Schulten K
    J Chem Theory Comput; 2012 Nov; 8(11):4413-4424. PubMed ID: 23204949
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A generic force field for protein coarse-grained molecular dynamics simulation.
    Gu J; Bai F; Li H; Wang X
    Int J Mol Sci; 2012 Nov; 13(11):14451-69. PubMed ID: 23203075
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multiscale simulation of small peptides: consistent conformational sampling in atomistic and coarse-grained models.
    Bezkorovaynaya O; Lukyanov A; Kremer K; Peter C
    J Comput Chem; 2012 Apr; 33(9):937-49. PubMed ID: 22298285
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites.
    Rzepiela AJ; Louhivuori M; Peter C; Marrink SJ
    Phys Chem Chem Phys; 2011 Jun; 13(22):10437-48. PubMed ID: 21494747
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The multiscale coarse-graining method: assessing its accuracy and introducing density dependent coarse-grain potentials.
    Izvekov S; Chung PW; Rice BM
    J Chem Phys; 2010 Aug; 133(6):064109. PubMed ID: 20707563
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations.
    Takada S; Kanada R; Tan C; Terakawa T; Li W; Kenzaki H
    Acc Chem Res; 2015 Dec; 48(12):3026-35. PubMed ID: 26575522
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Classical simulations from the atomistic to the mesoscale and back: coarse graining an liquid crystal.
    Peter C; Delle Site L; Kremer K
    Soft Matter; 2008 Mar; 4(4):859-869. PubMed ID: 32907192
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Can a coarse-grained water model capture the key physical features of the hydrophobic effect?
    Ghosh K; Loose TD; Voth GA
    J Chem Phys; 2023 Dec; 159(22):. PubMed ID: 38078523
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Multiscale coarse graining of liquid-state systems.
    Izvekov S; Voth GA
    J Chem Phys; 2005 Oct; 123(13):134105. PubMed ID: 16223273
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Coarse-grained prediction of RNA loop structures.
    Liu L; Chen SJ
    PLoS One; 2012; 7(11):e48460. PubMed ID: 23144887
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bottom-Up Coarse-Graining of Peptide Ensembles and Helix-Coil Transitions.
    Rudzinski JF; Noid WG
    J Chem Theory Comput; 2015 Mar; 11(3):1278-91. PubMed ID: 26579774
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accuracy, Transferability, and Efficiency of Coarse-Grained Models of Molecular Liquids.
    Guenza MG; Dinpajooh M; McCarty J; Lyubimov IY
    J Phys Chem B; 2018 Nov; 122(45):10257-10278. PubMed ID: 30153027
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.