BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

462 related articles for article (PubMed ID: 31381222)

  • 1. Transposable elements contribute to dynamic genome content in maize.
    Anderson SN; Stitzer MC; Brohammer AB; Zhou P; Noshay JM; O'Connor CH; Hirsch CD; Ross-Ibarra J; Hirsch CN; Springer NM
    Plant J; 2019 Dec; 100(5):1052-1065. PubMed ID: 31381222
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons.
    Noshay JM; Marand AP; Anderson SN; Zhou P; Mejia Guerra MK; Lu Z; O'Connor CH; Crisp PA; Hirsch CN; Schmitz RJ; Springer NM
    Genetics; 2021 Mar; 217(1):1-13. PubMed ID: 33683350
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The genomic ecosystem of transposable elements in maize.
    Stitzer MC; Anderson SN; Springer NM; Ross-Ibarra J
    PLoS Genet; 2021 Oct; 17(10):e1009768. PubMed ID: 34648488
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Whole-genome variation of transposable element insertions in a maize diversity panel.
    Qiu Y; O'Connor CH; Della Coletta R; Renk JS; Monnahan PJ; Noshay JM; Liang Z; Gilbert A; Anderson SN; McGaugh SE; Springer NM; Hirsch CN
    G3 (Bethesda); 2021 Sep; 11(10):. PubMed ID: 34568911
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Transposable elements contribute to activation of maize genes in response to abiotic stress.
    Makarevitch I; Waters AJ; West PT; Stitzer M; Hirsch CN; Ross-Ibarra J; Springer NM
    PLoS Genet; 2015 Jan; 11(1):e1004915. PubMed ID: 25569788
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize.
    Liang Z; Anderson SN; Noshay JM; Crisp PA; Enders TA; Springer NM
    Plant Physiol; 2021 May; 186(1):420-433. PubMed ID: 33591319
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion.
    Munasinghe M; Read A; Stitzer MC; Song B; Menard CC; Ma KY; Brandvain Y; Hirsch CN; Springer N
    PLoS Genet; 2023 Dec; 19(12):e1011086. PubMed ID: 38134220
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TIR-Learner, a New Ensemble Method for TIR Transposable Element Annotation, Provides Evidence for Abundant New Transposable Elements in the Maize Genome.
    Su W; Gu X; Peterson T
    Mol Plant; 2019 Mar; 12(3):447-460. PubMed ID: 30802553
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Monitoring the interplay between transposable element families and DNA methylation in maize.
    Noshay JM; Anderson SN; Zhou P; Ji L; Ricci W; Lu Z; Stitzer MC; Crisp PA; Hirsch CN; Zhang X; Schmitz RJ; Springer NM
    PLoS Genet; 2019 Sep; 15(9):e1008291. PubMed ID: 31498837
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians.
    Tenaillon MI; Hufford MB; Gaut BS; Ross-Ibarra J
    Genome Biol Evol; 2011; 3():219-29. PubMed ID: 21296765
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription.
    Forestan C; Farinati S; Aiese Cigliano R; Lunardon A; Sanseverino W; Varotto S
    BMC Plant Biol; 2017 Oct; 17(1):161. PubMed ID: 29025411
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome.
    Diez CM; Meca E; Tenaillon MI; Gaut BS
    PLoS Genet; 2014 Apr; 10(4):e1004298. PubMed ID: 24743518
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.
    Kurtz S; Narechania A; Stein JC; Ware D
    BMC Genomics; 2008 Oct; 9():517. PubMed ID: 18976482
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Transposable elements and the evolution of gene expression.
    Wessler SR
    Symp Soc Exp Biol; 1998; 51():115-22. PubMed ID: 10645433
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Detailed analysis of a contiguous 22-Mb region of the maize genome.
    Wei F; Stein JC; Liang C; Zhang J; Fulton RS; Baucom RS; De Paoli E; Zhou S; Yang L; Han Y; Pasternak S; Narechania A; Zhang L; Yeh CT; Ying K; Nagel DH; Collura K; Kudrna D; Currie J; Lin J; Kim H; Angelova A; Scara G; Wissotski M; Golser W; Courtney L; Kruchowski S; Graves TA; Rock SM; Adams S; Fulton LA; Fronick C; Courtney W; Kramer M; Spiegel L; Nascimento L; Kalyanaraman A; Chaparro C; Deragon JM; Miguel PS; Jiang N; Wessler SR; Green PJ; Yu Y; Schwartz DC; Meyers BC; Bennetzen JL; Martienssen RA; McCombie WR; Aluru S; Clifton SW; Schnable PS; Ware D; Wilson RK; Wing RA
    PLoS Genet; 2009 Nov; 5(11):e1000728. PubMed ID: 19936048
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The maize W22 genome provides a foundation for functional genomics and transposon biology.
    Springer NM; Anderson SN; Andorf CM; Ahern KR; Bai F; Barad O; Barbazuk WB; Bass HW; Baruch K; Ben-Zvi G; Buckler ES; Bukowski R; Campbell MS; Cannon EKS; Chomet P; Dawe RK; Davenport R; Dooner HK; Du LH; Du C; Easterling KA; Gault C; Guan JC; Hunter CT; Jander G; Jiao Y; Koch KE; Kol G; Köllner TG; Kudo T; Li Q; Lu F; Mayfield-Jones D; Mei W; McCarty DR; Noshay JM; Portwood JL; Ronen G; Settles AM; Shem-Tov D; Shi J; Soifer I; Stein JC; Stitzer MC; Suzuki M; Vera DL; Vollbrecht E; Vrebalov JT; Ware D; Wei S; Wimalanathan K; Woodhouse MR; Xiong W; Brutnell TP
    Nat Genet; 2018 Sep; 50(9):1282-1288. PubMed ID: 30061736
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads.
    Staton SE; Burke JM
    Bioinformatics; 2015 Jun; 31(11):1827-9. PubMed ID: 25644271
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize.
    Anderson SN; Stitzer MC; Zhou P; Ross-Ibarra J; Hirsch CD; Springer NM
    G3 (Bethesda); 2019 Nov; 9(11):3673-3682. PubMed ID: 31506319
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The widespread nature of Pack-TYPE transposons reveals their importance for plant genome evolution.
    Gisby JS; Catoni M
    PLoS Genet; 2022 Feb; 18(2):e1010078. PubMed ID: 35202390
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes.
    Han Y; Qin S; Wessler SR
    BMC Genomics; 2013 Jan; 14():71. PubMed ID: 23369001
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.