120 related articles for article (PubMed ID: 3139027)
1. Molecular dynamics simulations of ribonuclease T1: analysis of the effect of solvent on the structure, fluctuations, and active site of the free enzyme.
MacKerell AD; Nilsson L; Rigler R; Saenger W
Biochemistry; 1988 Jun; 27(12):4547-56. PubMed ID: 3139027
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics simulations of ribonuclease T1: comparison of the free enzyme and the 2' GMP-enzyme complex.
MacKerell AD; Nilsson L; Rigler R; Heinemann U; Saenger W
Proteins; 1989; 6(1):20-31. PubMed ID: 2558378
[TBL] [Abstract][Full Text] [Related]
3. Molecular dynamics simulations of ribonuclease T1. Effect of solvent on the interaction with 2'GMP.
MacKerell AD; Rigler R; Nilsson L; Heinemann U; Saenger W
Eur Biophys J; 1988; 16(5):287-97. PubMed ID: 2853669
[TBL] [Abstract][Full Text] [Related]
4. Crystal structures of ribonuclease F1 of Fusarium moniliforme in its free form and in complex with 2'GMP.
Vassylyev DG; Katayanagi K; Ishikawa K; Tsujimoto-Hirano M; Danno M; Pähler A; Matsumoto O; Matsushima M; Yoshida H; Morikawa K
J Mol Biol; 1993 Apr; 230(3):979-96. PubMed ID: 8386773
[TBL] [Abstract][Full Text] [Related]
5. Three-dimensional structure of a mutant ribonuclease T1 (Y45W) complexed with non-cognizable ribonucleotide, 2'AMP, and its comparison with a specific complex with 2'GMP.
Hakoshima T; Itoh T; Tomita K; Goda K; Nishikawa S; Morioka H; Uesugi S; Ohtsuka E; Ikehara M
J Mol Biol; 1992 Feb; 223(4):1013-28. PubMed ID: 1311385
[TBL] [Abstract][Full Text] [Related]
6. Calculation of the relative binding free energy of 2'GMP and 2'AMP to ribonuclease T1 using molecular dynamics/free energy perturbation approaches.
Hirono S; Kollman PA
J Mol Biol; 1990 Mar; 212(1):197-209. PubMed ID: 2157020
[TBL] [Abstract][Full Text] [Related]
7. Molecular dynamics of tryptophan in ribonuclease-T1. I. Simulation strategies and fluorescence anisotropy decay.
Axelsen PH; Haydock C; Prendergast FG
Biophys J; 1988 Aug; 54(2):249-58. PubMed ID: 3145038
[TBL] [Abstract][Full Text] [Related]
8. Phosphorescence and optically detected magnetic resonance measurements of the 2'AMP and 2'GMP complexes of a mutant ribonuclease T1 (Y45W) in solution: correlation with X-ray crystal structures.
Lam WC; Maki AH; Itoh T; Hakoshima T
Biochemistry; 1992 Jul; 31(29):6756-60. PubMed ID: 1322171
[TBL] [Abstract][Full Text] [Related]
9. pH dependence of binding reactions from free energy simulations and macroscopic continuum electrostatic calculations: application to 2'GMP/3'GMP binding to ribonuclease T1 and implications for catalysis.
MacKerell AD; Sommer MS; Karplus M
J Mol Biol; 1995 Apr; 247(4):774-807. PubMed ID: 7723031
[TBL] [Abstract][Full Text] [Related]
10. Binding modes of inhibitors to ribonuclease T1 as elucidated by the analysis of two-dimensional NMR.
Shimada I; Inagaki F
Nucleic Acids Symp Ser; 1989; (21):57-8. PubMed ID: 2514414
[TBL] [Abstract][Full Text] [Related]
11. Thermodynamic analysis of the equilibrium, association and dissociation of 2'GMP and 3'GMP with ribonuclease T1 at pH 5.3.
MacKerell AD; Rigler R; Hahn U; Saenger W
Biochim Biophys Acta; 1991 Mar; 1073(2):357-65. PubMed ID: 1849008
[TBL] [Abstract][Full Text] [Related]
12. Protein dynamics. A time-resolved fluorescence, energetic and molecular dynamics study of ribonuclease T1.
MacKerell AD; Rigler R; Nilsson L; Hahn U; Saenger W
Biophys Chem; 1987 May; 26(2-3):247-61. PubMed ID: 3111558
[TBL] [Abstract][Full Text] [Related]
13. Binding modes of inhibitors of ribonuclease T1 as elucidated by analysis of two-dimensional NMR.
Shimada I; Inagaki F
Biochemistry; 1990 Jan; 29(3):757-64. PubMed ID: 2159788
[TBL] [Abstract][Full Text] [Related]
14. Molecular dynamics of tryptophan in ribonuclease-T1. II. Correlations with fluorescence.
Axelsen PH; Prendergast FG
Biophys J; 1989 Jul; 56(1):43-66. PubMed ID: 2502198
[TBL] [Abstract][Full Text] [Related]
15. Determination of the backbone mobility of ribonuclease T1 and its 2'GMP complex using molecular dynamics simulations and NMR relaxation data.
Fushman D; Ohlenschläger O; Rüterjans H
J Biomol Struct Dyn; 1994 Jun; 11(6):1377-402. PubMed ID: 7946080
[TBL] [Abstract][Full Text] [Related]
16. Non-cognizable ribonucleotide, 2'AMP, binds to a mutant ribonuclease T1 (Y45W) at a new base-binding site but not at the guanine-recognition site.
Hakoshima T; Itoh T; Gohda K; Tomita K; Uesugi S; Nishikawa S; Morioka H; Ohtsuka E; Ikehara M
FEBS Lett; 1991 Sep; 290(1-2):216-20. PubMed ID: 1655533
[TBL] [Abstract][Full Text] [Related]
17. Crystallization and preliminary X-ray investigation of non-specific complexes of a mutant ribonuclease T1 (Y45W) with 2'AMP and 2'UMP.
Hakoshima T; Itoh T; Tomita K; Nishikawa S; Morioka H; Uesugi S; Ohtsuka E; Ikehara M
J Mol Biol; 1990 Dec; 216(3):497-9. PubMed ID: 2124272
[TBL] [Abstract][Full Text] [Related]
18. Conformation of 2'GMP bound to a mutant ribonuclease T1 (Y45W) determined by X-ray diffraction and NMR methods.
Itoh T; Tomita K; Hakoshima T; Hiroaki H; Uesugi S; Nishikawa S; Amisaki T; Morioka H; Ohtsuka E; Ikehara M
J Biochem; 1991 Nov; 110(5):677-80. PubMed ID: 1664424
[TBL] [Abstract][Full Text] [Related]
19. Three-dimensional structure of Gln25-ribonuclease T1 at 1.84-A resolution: structural variations at the base recognition and catalytic sites.
Arni RK; Pal GP; Ravichandran KG; Tulinsky A; Walz FG; Metcalf P
Biochemistry; 1992 Mar; 31(12):3126-35. PubMed ID: 1554699
[TBL] [Abstract][Full Text] [Related]
20. Crystallization of a complex between ribonuclease T1 and 2'-guanylic acid.
Heinemann U; Wernitz M; Pähler A; Saenger W; Menke G; Rüterjans H
Eur J Biochem; 1980 Aug; 109(1):109-14. PubMed ID: 6250834
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
