These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

176 related articles for article (PubMed ID: 31393558)

  • 1. Integrating ab initio and template-based algorithms for protein-protein complex structure prediction.
    Vangaveti S; Vreven T; Zhang Y; Weng Z
    Bioinformatics; 2020 Feb; 36(3):751-757. PubMed ID: 31393558
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ComDock: A novel approach for protein-protein docking with an efficient fusing strategy.
    Meng Q; Guo F; Wang E; Tang J
    Comput Biol Med; 2023 Dec; 167():107660. PubMed ID: 37944303
    [TBL] [Abstract][Full Text] [Related]  

  • 3. P3DOCK: a protein-RNA docking webserver based on template-based and template-free docking.
    Zheng J; Hong X; Xie J; Tong X; Liu S
    Bioinformatics; 2020 Jan; 36(1):96-103. PubMed ID: 31173056
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y; Wen Z; Wang X; Huang SY
    Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier.
    Xia J; Peng Z; Qi D; Mu H; Yang J
    Bioinformatics; 2017 Mar; 33(6):863-870. PubMed ID: 28039166
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evaluating template-based and template-free protein-protein complex structure prediction.
    Vreven T; Hwang H; Pierce BG; Weng Z
    Brief Bioinform; 2014 Mar; 15(2):169-76. PubMed ID: 23818491
    [TBL] [Abstract][Full Text] [Related]  

  • 7. LightDock goes information-driven.
    Roel-Touris J; Bonvin AMJJ; Jiménez-García B
    Bioinformatics; 2020 Feb; 36(3):950-952. PubMed ID: 31418773
    [TBL] [Abstract][Full Text] [Related]  

  • 8. AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain-domain interaction prediction.
    Xu D; Jaroszewski L; Li Z; Godzik A
    Bioinformatics; 2015 Jul; 31(13):2098-105. PubMed ID: 25701568
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Limits and potential of combined folding and docking.
    Pozzati G; Zhu W; Bassot C; Lamb J; Kundrotas P; Elofsson A
    Bioinformatics; 2022 Jan; 38(4):954-961. PubMed ID: 34788800
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integrating Cross-Linking Experiments with Ab Initio Protein-Protein Docking.
    Vreven T; Schweppe DK; Chavez JD; Weisbrod CR; Shibata S; Zheng C; Bruce JE; Weng Z
    J Mol Biol; 2018 Jun; 430(12):1814-1828. PubMed ID: 29665372
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An Improved Integration of Template-Based and Template-Free Protein Structure Modeling Methods and its Assessment in CASP11.
    Li J; Adhikari B; Cheng J
    Protein Pept Lett; 2015; 22(7):586-93. PubMed ID: 25990081
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Combining co-evolution and secondary structure prediction to improve fragment library generation.
    de Oliveira SHP; Deane CM
    Bioinformatics; 2018 Jul; 34(13):2219-2227. PubMed ID: 29462243
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mapping monomeric threading to protein-protein structure prediction.
    Guerler A; Govindarajoo B; Zhang Y
    J Chem Inf Model; 2013 Mar; 53(3):717-25. PubMed ID: 23413988
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RRDB: a comprehensive and non-redundant benchmark for RNA-RNA docking and scoring.
    Yan Y; Huang SY
    Bioinformatics; 2018 Feb; 34(3):453-458. PubMed ID: 29028888
    [TBL] [Abstract][Full Text] [Related]  

  • 15. OpenBioLink: a benchmarking framework for large-scale biomedical link prediction.
    Breit A; Ott S; Agibetov A; Samwald M
    Bioinformatics; 2020 Jul; 36(13):4097-4098. PubMed ID: 32339214
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sphinx: merging knowledge-based and ab initio approaches to improve protein loop prediction.
    Marks C; Nowak J; Klostermann S; Georges G; Dunbar J; Shi J; Kelm S; Deane CM
    Bioinformatics; 2017 May; 33(9):1346-1353. PubMed ID: 28453681
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.
    Lee H; Baek M; Lee GR; Park S; Seok C
    Proteins; 2017 Mar; 85(3):399-407. PubMed ID: 27770545
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals.
    Hu X; Dong Q; Yang J; Zhang Y
    Bioinformatics; 2016 Nov; 32(21):3260-3269. PubMed ID: 27378301
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.
    Vangone A; Rodrigues JP; Xue LC; van Zundert GC; Geng C; Kurkcuoglu Z; Nellen M; Narasimhan S; Karaca E; van Dijk M; Melquiond AS; Visscher KM; Trellet M; Kastritis PL; Bonvin AM
    Proteins; 2017 Mar; 85(3):417-423. PubMed ID: 27802573
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PconsFold: improved contact predictions improve protein models.
    Michel M; Hayat S; Skwark MJ; Sander C; Marks DS; Elofsson A
    Bioinformatics; 2014 Sep; 30(17):i482-8. PubMed ID: 25161237
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.