These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

318 related articles for article (PubMed ID: 31399549)

  • 1. Distance-based protein folding powered by deep learning.
    Xu J
    Proc Natl Acad Sci U S A; 2019 Aug; 116(34):16856-16865. PubMed ID: 31399549
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Analysis of distance-based protein structure prediction by deep learning in CASP13.
    Xu J; Wang S
    Proteins; 2019 Dec; 87(12):1069-1081. PubMed ID: 31471916
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.
    Wang S; Sun S; Li Z; Zhang R; Xu J
    PLoS Comput Biol; 2017 Jan; 13(1):e1005324. PubMed ID: 28056090
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.
    Hou J; Wu T; Cao R; Cheng J
    Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learning.
    Adhikari B; Hou J; Cheng J
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):84-96. PubMed ID: 29047157
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Analysis of deep learning methods for blind protein contact prediction in CASP12.
    Wang S; Sun S; Xu J
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):67-77. PubMed ID: 28845538
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Folding Membrane Proteins by Deep Transfer Learning.
    Wang S; Li Z; Yu Y; Xu J
    Cell Syst; 2017 Sep; 5(3):202-211.e3. PubMed ID: 28957654
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PredMP: a web server for de novo prediction and visualization of membrane proteins.
    Wang S; Fei S; Wang Z; Li Y; Xu J; Zhao F; Gao X
    Bioinformatics; 2019 Feb; 35(4):691-693. PubMed ID: 30084960
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.
    Zhang C; Mortuza SM; He B; Wang Y; Zhang Y
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):136-151. PubMed ID: 29082551
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Estimation of model accuracy in CASP13.
    Cheng J; Choe MH; Elofsson A; Han KS; Hou J; Maghrabi AHA; McGuffin LJ; Menéndez-Hurtado D; Olechnovič K; Schwede T; Studer G; Uziela K; Venclovas Č; Wallner B
    Proteins; 2019 Dec; 87(12):1361-1377. PubMed ID: 31265154
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CoinFold: a web server for protein contact prediction and contact-assisted protein folding.
    Wang S; Li W; Zhang R; Liu S; Xu J
    Nucleic Acids Res; 2016 Jul; 44(W1):W361-6. PubMed ID: 27112569
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PolyFold: An interactive visual simulator for distance-based protein folding.
    McGehee AJ; Bhattacharya S; Roche R; Bhattacharya D
    PLoS One; 2020; 15(12):e0243331. PubMed ID: 33270805
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Web-Based Protocol for Interprotein Contact Prediction by Deep Learning.
    Jing X; Zeng H; Wang S; Xu J
    Methods Mol Biol; 2020; 2074():67-80. PubMed ID: 31583631
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations.
    Zheng W; Zhang C; Li Y; Pearce R; Bell EW; Zhang Y
    Cell Rep Methods; 2021 Jul; 1(3):. PubMed ID: 34355210
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The MULTICOM Protein Structure Prediction Server Empowered by Deep Learning and Contact Distance Prediction.
    Hou J; Wu T; Guo Z; Quadir F; Cheng J
    Methods Mol Biol; 2020; 2165():13-26. PubMed ID: 32621217
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The whole is greater than its parts: ensembling improves protein contact prediction.
    Billings WM; Morris CJ; Della Corte D
    Sci Rep; 2021 Apr; 11(1):8039. PubMed ID: 33850214
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Membrane protein contact and structure prediction using co-evolution in conjunction with machine learning.
    Teixeira PL; Mendenhall JL; Heinze S; Weiner B; Skwark MJ; Meiler J
    PLoS One; 2017; 12(5):e0177866. PubMed ID: 28542325
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks.
    Li Y; Zhang C; Bell EW; Zheng W; Zhou X; Yu DJ; Zhang Y
    PLoS Comput Biol; 2021 Mar; 17(3):e1008865. PubMed ID: 33770072
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.
    Karczyńska AS; Ziȩba K; Uciechowska U; Mozolewska MA; Krupa P; Lubecka EA; Lipska AG; Sikorska C; Samsonov SA; Sieradzan AK; Giełdoń A; Liwo A; Ślusarz R; Ślusarz M; Lee J; Joo K; Czaplewski C
    J Chem Inf Model; 2020 Mar; 60(3):1844-1864. PubMed ID: 31999919
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improved protein structure prediction using predicted interresidue orientations.
    Yang J; Anishchenko I; Park H; Peng Z; Ovchinnikov S; Baker D
    Proc Natl Acad Sci U S A; 2020 Jan; 117(3):1496-1503. PubMed ID: 31896580
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.