408 related articles for article (PubMed ID: 31400112)
1. A deep learning genome-mining strategy for biosynthetic gene cluster prediction.
Hannigan GD; Prihoda D; Palicka A; Soukup J; Klempir O; Rampula L; Durcak J; Wurst M; Kotowski J; Chang D; Wang R; Piizzi G; Temesi G; Hazuda DJ; Woelk CH; Bitton DA
Nucleic Acids Res; 2019 Oct; 47(18):e110. PubMed ID: 31400112
[TBL] [Abstract][Full Text] [Related]
2. Deep Learning to Predict the Biosynthetic Gene Clusters in Bacterial Genomes.
Liu M; Li Y; Li H
J Mol Biol; 2022 Aug; 434(15):167597. PubMed ID: 35526560
[TBL] [Abstract][Full Text] [Related]
3. Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters.
Blin K; Kim HU; Medema MH; Weber T
Brief Bioinform; 2019 Jul; 20(4):1103-1113. PubMed ID: 29112695
[TBL] [Abstract][Full Text] [Related]
4. Predicting fungal secondary metabolite activity from biosynthetic gene cluster data using machine learning.
Riedling O; Walker AS; Rokas A
Microbiol Spectr; 2024 Feb; 12(2):e0340023. PubMed ID: 38193680
[TBL] [Abstract][Full Text] [Related]
5. Deep self-supervised learning for biosynthetic gene cluster detection and product classification.
Rios-Martinez C; Bhattacharya N; Amini AP; Crawford L; Yang KK
PLoS Comput Biol; 2023 May; 19(5):e1011162. PubMed ID: 37220151
[TBL] [Abstract][Full Text] [Related]
6. Identification of Thiotetronic Acid Antibiotic Biosynthetic Pathways by Target-directed Genome Mining.
Tang X; Li J; Millán-Aguiñaga N; Zhang JJ; O'Neill EC; Ugalde JA; Jensen PR; Mantovani SM; Moore BS
ACS Chem Biol; 2015 Dec; 10(12):2841-2849. PubMed ID: 26458099
[TBL] [Abstract][Full Text] [Related]
7. Transcription Factor Repurposing Offers Insights into Evolution of Biosynthetic Gene Cluster Regulation.
Wang W; Drott M; Greco C; Luciano-Rosario D; Wang P; Keller NP
mBio; 2021 Aug; 12(4):e0139921. PubMed ID: 34281384
[TBL] [Abstract][Full Text] [Related]
8. A Single Biosynthetic Gene Cluster Is Responsible for the Production of Bagremycin Antibiotics and Ferroverdin Iron Chelators.
Martinet L; Naômé A; Deflandre B; Maciejewska M; Tellatin D; Tenconi E; Smargiasso N; de Pauw E; van Wezel GP; Rigali S
mBio; 2019 Aug; 10(4):. PubMed ID: 31409675
[TBL] [Abstract][Full Text] [Related]
9. Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli.
Duell ER; D'Agostino PM; Shapiro N; Woyke T; Fuchs TM; Gulder TAM
Microb Cell Fact; 2019 Feb; 18(1):32. PubMed ID: 30732610
[TBL] [Abstract][Full Text] [Related]
10. Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease.
Aleti G; Baker JL; Tang X; Alvarez R; Dinis M; Tran NC; Melnik AV; Zhong C; Ernst M; Dorrestein PC; Edlund A
mBio; 2019 Apr; 10(2):. PubMed ID: 30992349
[TBL] [Abstract][Full Text] [Related]
11. Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning.
Almeida H; Tsang A; Diallo AB
Bioinformatics; 2022 Aug; 38(16):3984-3991. PubMed ID: 35762945
[TBL] [Abstract][Full Text] [Related]
12. Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem.
Sánchez-Navarro R; Nuhamunada M; Mohite OS; Wasmund K; Albertsen M; Gram L; Nielsen PH; Weber T; Singleton CM
mSystems; 2022 Dec; 7(6):e0063222. PubMed ID: 36445112
[TBL] [Abstract][Full Text] [Related]
13. Output ordering and prioritisation system (OOPS): ranking biosynthetic gene clusters to enhance bioactive metabolite discovery.
Peña A; Del Carratore F; Cummings M; Takano E; Breitling R
J Ind Microbiol Biotechnol; 2018 Jul; 45(7):615-619. PubMed ID: 29255991
[TBL] [Abstract][Full Text] [Related]
14. Targeted Large-Scale Genome Mining and Candidate Prioritization for Natural Product Discovery.
Malit JJL; Leung HYC; Qian PY
Mar Drugs; 2022 Jun; 20(6):. PubMed ID: 35736201
[TBL] [Abstract][Full Text] [Related]
15. Interpreting Microbial Biosynthesis in the Genomic Age: Biological and Practical Considerations.
Miller IJ; Chevrette MG; Kwan JC
Mar Drugs; 2017 Jun; 15(6):. PubMed ID: 28587290
[TBL] [Abstract][Full Text] [Related]
16. Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products.
Li YF; Tsai KJS; Harvey CJB; Li JJ; Ary BE; Berlew EE; Boehman BL; Findley DM; Friant AG; Gardner CA; Gould MP; Ha JH; Lilley BK; McKinstry EL; Nawal S; Parry RC; Rothchild KW; Silbert SD; Tentilucci MD; Thurston AM; Wai RB; Yoon Y; Aiyar RS; Medema MH; Hillenmeyer ME; Charkoudian LK
Fungal Genet Biol; 2016 Apr; 89():18-28. PubMed ID: 26808821
[TBL] [Abstract][Full Text] [Related]
17. Mining and unearthing hidden biosynthetic potential.
Scherlach K; Hertweck C
Nat Commun; 2021 Jun; 12(1):3864. PubMed ID: 34162873
[TBL] [Abstract][Full Text] [Related]
18. A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters.
Witjes L; Kooke R; van der Hooft JJJ; de Vos RCH; Keurentjes JJB; Medema MH; Nijveen H
BMC Res Notes; 2019 Apr; 12(1):194. PubMed ID: 30940198
[TBL] [Abstract][Full Text] [Related]
19. Exploring Newer Biosynthetic Gene Clusters in Marine Microbial Prospecting.
Kaari M; Manikkam R; Baskaran A
Mar Biotechnol (NY); 2022 Jun; 24(3):448-467. PubMed ID: 35394575
[TBL] [Abstract][Full Text] [Related]
20. Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi.
Tran PN; Yen MR; Chiang CY; Lin HC; Chen PY
Appl Microbiol Biotechnol; 2019 Apr; 103(8):3277-3287. PubMed ID: 30859257
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]