434 related articles for article (PubMed ID: 31405145)
1. Impact of the Position of the Chemically Modified 5-Furyl-2'-Deoxyuridine Nucleoside on the Thrombin DNA Aptamer-Protein Complex: Structural Insights into Aptamer Response from MD Simulations.
Seelam Prabhakar P; A Manderville R; D Wetmore S
Molecules; 2019 Aug; 24(16):. PubMed ID: 31405145
[TBL] [Abstract][Full Text] [Related]
2. Crystal structures of thrombin in complex with chemically modified thrombin DNA aptamers reveal the origins of enhanced affinity.
Dolot R; Lam CH; Sierant M; Zhao Q; Liu FW; Nawrot B; Egli M; Yang X
Nucleic Acids Res; 2018 May; 46(9):4819-4830. PubMed ID: 29684204
[TBL] [Abstract][Full Text] [Related]
3. Manipulation of a DNA aptamer-protein binding site through arylation of internal guanine residues.
Van Riesen AJ; Fadock KL; Deore PS; Desoky A; Manderville RA; Sowlati-Hashjin S; Wetmore SD
Org Biomol Chem; 2018 May; 16(20):3831-3840. PubMed ID: 29745412
[TBL] [Abstract][Full Text] [Related]
4. Unfolding and conformational variations of thrombin-binding DNA aptamers: synthesis, circular dichroism and molecular dynamics simulations.
Sun L; Jin H; Zhao X; Liu Z; Guan Y; Yang Z; Zhang L; Zhang L
ChemMedChem; 2014 May; 9(5):993-1001. PubMed ID: 24715713
[TBL] [Abstract][Full Text] [Related]
5. Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer.
Pica A; Russo Krauss I; Merlino A; Nagatoishi S; Sugimoto N; Sica F
FEBS J; 2013 Dec; 280(24):6581-8. PubMed ID: 24128303
[TBL] [Abstract][Full Text] [Related]
6. Stability and bioactivity of thrombin binding aptamers modified with D-/L-isothymidine in the loop regions.
Cai B; Yang X; Sun L; Fan X; Li L; Jin H; Wu Y; Guan Z; Zhang L; Zhang L; Yang Z
Org Biomol Chem; 2014 Nov; 12(44):8866-76. PubMed ID: 25264858
[TBL] [Abstract][Full Text] [Related]
7. Cation Coordination Alters the Conformation of a Thrombin-Binding G-Quadruplex DNA Aptamer That Affects Inhibition of Thrombin.
Zavyalova E; Tagiltsev G; Reshetnikov R; Arutyunyan A; Kopylov A
Nucleic Acid Ther; 2016 Oct; 26(5):299-308. PubMed ID: 27159247
[TBL] [Abstract][Full Text] [Related]
8. A structure-activity relationship of a thrombin-binding aptamer containing LNA in novel sites.
Ying G; Lu X; Mei J; Zhang Y; Chen J; Wang X; Ou Z; Yi Y
Bioorg Med Chem; 2019 Jul; 27(14):3201-3207. PubMed ID: 31171404
[TBL] [Abstract][Full Text] [Related]
9. A Simple Molecular Rotor for Defining Nucleoside Environment within a DNA Aptamer-Protein Complex.
Cservenyi TZ; Van Riesen AJ; Berger FD; Desoky A; Manderville RA
ACS Chem Biol; 2016 Sep; 11(9):2576-82. PubMed ID: 27447371
[TBL] [Abstract][Full Text] [Related]
10. Structural and Binding Effects of Chemical Modifications on Thrombin Binding Aptamer (TBA).
Valsangkar V; Vangaveti S; Lee GW; Fahssi WM; Awan WS; Huang Y; Chen AA; Sheng J
Molecules; 2021 Jul; 26(15):. PubMed ID: 34361773
[TBL] [Abstract][Full Text] [Related]
11. Synthesis, characterization and in vitro activity of thrombin-binding DNA aptamers with triazole internucleotide linkages.
Varizhuk AM; Tsvetkov VB; Tatarinova ON; Kaluzhny DN; Florentiev VL; Timofeev EN; Shchyolkina AK; Borisova OF; Smirnov IP; Grokhovsky SL; Aseychev AV; Pozmogova GE
Eur J Med Chem; 2013 Sep; 67():90-7. PubMed ID: 23850569
[TBL] [Abstract][Full Text] [Related]
12. Probing the Nitroindole-Modified Central Loop of Thrombin Aptamer HD1 as a Recognition Site.
Kolganova NA; Tsvetkov VB; Smirnov IP; Timofeev EN
Nucleic Acid Ther; 2019 Aug; 29(4):208-217. PubMed ID: 30864877
[TBL] [Abstract][Full Text] [Related]
13. Structural Dynamics of Thrombin-Binding DNA Aptamer d(GGTTGGTGTGGTTGG) Quadruplex DNA Studied by Large-Scale Explicit Solvent Simulations.
Reshetnikov R; Golovin A; Spiridonova V; Kopylov A; Šponer J
J Chem Theory Comput; 2010 Oct; 6(10):3003-14. PubMed ID: 26616765
[TBL] [Abstract][Full Text] [Related]
14. Stability and binding properties of a modified thrombin binding aptamer.
Pagano B; Martino L; Randazzo A; Giancola C
Biophys J; 2008 Jan; 94(2):562-9. PubMed ID: 17890401
[TBL] [Abstract][Full Text] [Related]
15. Development of an Efficient G-Quadruplex-Stabilised Thrombin-Binding Aptamer Containing a Three-Carbon Spacer Molecule.
Aaldering LJ; Poongavanam V; Langkjaer N; Murugan NA; Jørgensen PT; Wengel J; Veedu RN
Chembiochem; 2017 Apr; 18(8):755-763. PubMed ID: 28150905
[TBL] [Abstract][Full Text] [Related]
16. Lighting Up the Thrombin-Binding Aptamer G-Quadruplex with an Internal Cyanine-Indole-Quinolinium Nucleobase Surrogate. Direct Fluorescent Intensity Readout for Thrombin Binding without Topology Switching.
Gray MD; Deore PS; Chung AJ; Van Riesen AJ; Manderville RA; Prabhakar PS; Wetmore SD
Bioconjug Chem; 2020 Nov; 31(11):2596-2606. PubMed ID: 33156614
[TBL] [Abstract][Full Text] [Related]
17. Thrombin-aptamer recognition: a revealed ambiguity.
Russo Krauss I; Merlino A; Giancola C; Randazzo A; Mazzarella L; Sica F
Nucleic Acids Res; 2011 Sep; 39(17):7858-67. PubMed ID: 21715374
[TBL] [Abstract][Full Text] [Related]
18. Structural and mechanistic insights into modified G-quadruplex thrombin-binding DNA aptamers.
Sun L; Xie X; Weng W; Jin H
Biochem Biophys Res Commun; 2019 Jun; 513(3):753-759. PubMed ID: 30992128
[TBL] [Abstract][Full Text] [Related]
19. Anomeric DNA quadruplexes.
Kolganova NA; Varizhuk AM; Novikov RA; Florentiev VL; Pozmogova GE; Borisova OF; Shchyolkina AK; Smirnov IP; Kaluzhny DN; Timofeev EN
Artif DNA PNA XNA; 2014; 5(2):e28422. PubMed ID: 25483931
[TBL] [Abstract][Full Text] [Related]
20. Conformational deviation of Thrombin binding G-quadruplex aptamer (TBA) in presence of divalent cation Sr
Pal S; Paul S
Int J Biol Macromol; 2019 Jan; 121():350-363. PubMed ID: 30308284
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
