These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. Hou J; Wu T; Cao R; Cheng J Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027 [TBL] [Abstract][Full Text] [Related]
3. Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods. Abriata LA; Tamò GE; Monastyrskyy B; Kryshtafovych A; Dal Peraro M Proteins; 2018 Mar; 86 Suppl 1():97-112. PubMed ID: 29139163 [TBL] [Abstract][Full Text] [Related]
4. A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments. Abriata LA; Tamò GE; Dal Peraro M Proteins; 2019 Dec; 87(12):1100-1112. PubMed ID: 31344267 [TBL] [Abstract][Full Text] [Related]
5. Evaluation of model refinement in CASP13. Read RJ; Sammito MD; Kryshtafovych A; Croll TI Proteins; 2019 Dec; 87(12):1249-1262. PubMed ID: 31365160 [TBL] [Abstract][Full Text] [Related]
6. Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13). Senior AW; Evans R; Jumper J; Kirkpatrick J; Sifre L; Green T; Qin C; Žídek A; Nelson AWR; Bridgland A; Penedones H; Petersen S; Simonyan K; Crossan S; Kohli P; Jones DT; Silver D; Kavukcuoglu K; Hassabis D Proteins; 2019 Dec; 87(12):1141-1148. PubMed ID: 31602685 [TBL] [Abstract][Full Text] [Related]
7. Assessment of protein assembly prediction in CASP12. Lafita A; Bliven S; Kryshtafovych A; Bertoni M; Monastyrskyy B; Duarte JM; Schwede T; Capitani G Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):247-256. PubMed ID: 29071742 [TBL] [Abstract][Full Text] [Related]
8. Assessment of template-based protein structure predictions in CASP10. Huang YJ; Mao B; Aramini JM; Montelione GT Proteins; 2014 Feb; 82 Suppl 2(0 2):43-56. PubMed ID: 24323734 [TBL] [Abstract][Full Text] [Related]
9. Analysis of distance-based protein structure prediction by deep learning in CASP13. Xu J; Wang S Proteins; 2019 Dec; 87(12):1069-1081. PubMed ID: 31471916 [TBL] [Abstract][Full Text] [Related]
10. Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12. Zhang C; Mortuza SM; He B; Wang Y; Zhang Y Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):136-151. PubMed ID: 29082551 [TBL] [Abstract][Full Text] [Related]
11. Assessing the accuracy of contact predictions in CASP13. Shrestha R; Fajardo E; Gil N; Fidelis K; Kryshtafovych A; Monastyrskyy B; Fiser A Proteins; 2019 Dec; 87(12):1058-1068. PubMed ID: 31587357 [TBL] [Abstract][Full Text] [Related]
12. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade. Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917 [TBL] [Abstract][Full Text] [Related]
14. Protein structure modeling and refinement by global optimization in CASP12. Hong SH; Joung I; Flores-Canales JC; Manavalan B; Cheng Q; Heo S; Kim JY; Lee SY; Nam M; Joo K; Lee IH; Lee SJ; Lee J Proteins; 2018 Mar; 86 Suppl 1():122-135. PubMed ID: 29159837 [TBL] [Abstract][Full Text] [Related]
15. Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learning. Adhikari B; Hou J; Cheng J Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):84-96. PubMed ID: 29047157 [TBL] [Abstract][Full Text] [Related]
16. Accurate template-based modeling in CASP12 using the IntFOLD4-TS, ModFOLD6, and ReFOLD methods. McGuffin LJ; Shuid AN; Kempster R; Maghrabi AHA; Nealon JO; Salehe BR; Atkins JD; Roche DB Proteins; 2018 Mar; 86 Suppl 1():335-344. PubMed ID: 28748648 [TBL] [Abstract][Full Text] [Related]
17. Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14. Liu J; Wu T; Guo Z; Hou J; Cheng J Proteins; 2022 Jan; 90(1):58-72. PubMed ID: 34291486 [TBL] [Abstract][Full Text] [Related]
18. Template based protein structure modeling by global optimization in CASP11. Joo K; Joung I; Lee SY; Kim JY; Cheng Q; Manavalan B; Joung JY; Heo S; Lee J; Nam M; Lee IH; Lee SJ; Lee J Proteins; 2016 Sep; 84 Suppl 1():221-32. PubMed ID: 26329522 [TBL] [Abstract][Full Text] [Related]
19. Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi-automated metrics. Abriata LA; Kinch LN; Tamò GE; Monastyrskyy B; Kryshtafovych A; Dal Peraro M Proteins; 2018 Mar; 86 Suppl 1():16-26. PubMed ID: 29044714 [TBL] [Abstract][Full Text] [Related]
20. Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences. Hura GL; Hodge CD; Rosenberg D; Guzenko D; Duarte JM; Monastyrskyy B; Grudinin S; Kryshtafovych A; Tainer JA; Fidelis K; Tsutakawa SE Proteins; 2019 Dec; 87(12):1298-1314. PubMed ID: 31589784 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]