151 related articles for article (PubMed ID: 31409275)
1. Estimating statistical significance of local protein profile-profile alignments.
Margelevičius M
BMC Bioinformatics; 2019 Aug; 20(1):419. PubMed ID: 31409275
[TBL] [Abstract][Full Text] [Related]
2. A low-complexity add-on score for protein remote homology search with COMER.
Margelevicius M
Bioinformatics; 2018 Jun; 34(12):2037-2045. PubMed ID: 29390109
[TBL] [Abstract][Full Text] [Related]
3. Improving the quality of twilight-zone alignments.
Jaroszewski L; Rychlewski L; Godzik A
Protein Sci; 2000 Aug; 9(8):1487-96. PubMed ID: 10975570
[TBL] [Abstract][Full Text] [Related]
4. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
Scheeff ED; Bourne PE
BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
[TBL] [Abstract][Full Text] [Related]
5. Scoring profile-to-profile sequence alignments.
Wang G; Dunbrack RL
Protein Sci; 2004 Jun; 13(6):1612-26. PubMed ID: 15152092
[TBL] [Abstract][Full Text] [Related]
6. Using CLUSTAL for multiple sequence alignments.
Higgins DG; Thompson JD; Gibson TJ
Methods Enzymol; 1996; 266():383-402. PubMed ID: 8743695
[TBL] [Abstract][Full Text] [Related]
7. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
8. DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment.
Wright ES
BMC Bioinformatics; 2015 Oct; 16():322. PubMed ID: 26445311
[TBL] [Abstract][Full Text] [Related]
9. SFESA: a web server for pairwise alignment refinement by secondary structure shifts.
Tong J; Pei J; Grishin NV
BMC Bioinformatics; 2015 Sep; 16(1):282. PubMed ID: 26335387
[TBL] [Abstract][Full Text] [Related]
10. COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance.
Sadreyev R; Grishin N
J Mol Biol; 2003 Feb; 326(1):317-36. PubMed ID: 12547212
[TBL] [Abstract][Full Text] [Related]
11. Bayesian nonparametrics in protein remote homology search.
Margelevičius M
Bioinformatics; 2016 Sep; 32(18):2744-52. PubMed ID: 27153649
[TBL] [Abstract][Full Text] [Related]
12. Accuracy of structure-based sequence alignment of automatic methods.
Kim C; Lee B
BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
[TBL] [Abstract][Full Text] [Related]
13. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
Huang YM; Bystroff C
Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
[TBL] [Abstract][Full Text] [Related]
14. Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure.
Frenkel-Morgenstern M; Voet H; Pietrokovski S
Bioinformatics; 2005 Jul; 21(13):2950-6. PubMed ID: 15870168
[TBL] [Abstract][Full Text] [Related]
15. Island method for estimating the statistical significance of profile-profile alignment scores.
Poleksic A
BMC Bioinformatics; 2009 Apr; 10():112. PubMed ID: 19379500
[TBL] [Abstract][Full Text] [Related]
16. Pareto optimal pairwise sequence alignment.
DeRonne KW; Karypis G
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(2):481-93. PubMed ID: 23929871
[TBL] [Abstract][Full Text] [Related]
17. A statistical score for assessing the quality of multiple sequence alignments.
Ahola V; Aittokallio T; Vihinen M; Uusipaikka E
BMC Bioinformatics; 2006 Nov; 7():484. PubMed ID: 17081313
[TBL] [Abstract][Full Text] [Related]
18. A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
Capriotti E; Fariselli P; Rossi I; Casadio R
Proteins; 2004 Feb; 54(2):351-60. PubMed ID: 14696197
[TBL] [Abstract][Full Text] [Related]
19. Context similarity scoring improves protein sequence alignments in the midnight zone.
Meier A; Söding J
Bioinformatics; 2015 Mar; 31(5):674-81. PubMed ID: 25338715
[TBL] [Abstract][Full Text] [Related]
20. STRUCTFAST: protein sequence remote homology detection and alignment using novel dynamic programming and profile-profile scoring.
Debe DA; Danzer JF; Goddard WA; Poleksic A
Proteins; 2006 Sep; 64(4):960-7. PubMed ID: 16786595
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]