213 related articles for article (PubMed ID: 31416440)
1. FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics.
Chanumolu SK; Albahrani M; Otu HH
BMC Bioinformatics; 2019 Aug; 20(1):424. PubMed ID: 31416440
[TBL] [Abstract][Full Text] [Related]
2. ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research.
Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
BMC Bioinformatics; 2016 Feb; 17():56. PubMed ID: 26830926
[TBL] [Abstract][Full Text] [Related]
3. RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data.
Zhou Q; Su X; Jing G; Chen S; Ning K
BMC Genomics; 2018 Feb; 19(1):144. PubMed ID: 29444661
[TBL] [Abstract][Full Text] [Related]
4. High-Throughput Tabular Data Processor - Platform independent graphical tool for processing large data sets.
Madanecki P; Bałut M; Buckley PG; Ochocka JR; Bartoszewski R; Crossman DK; Messiaen LM; Piotrowski A
PLoS One; 2018; 13(2):e0192858. PubMed ID: 29432475
[TBL] [Abstract][Full Text] [Related]
5. AfterQC: automatic filtering, trimming, error removing and quality control for fastq data.
Chen S; Huang T; Zhou Y; Han Y; Xu M; Gu J
BMC Bioinformatics; 2017 Mar; 18(Suppl 3):80. PubMed ID: 28361673
[TBL] [Abstract][Full Text] [Related]
6. Rapid evaluation and quality control of next generation sequencing data with FaQCs.
Lo CC; Chain PS
BMC Bioinformatics; 2014 Nov; 15(1):366. PubMed ID: 25408143
[TBL] [Abstract][Full Text] [Related]
7. QC-Chain: fast and holistic quality control method for next-generation sequencing data.
Zhou Q; Su X; Wang A; Xu J; Ning K
PLoS One; 2013; 8(4):e60234. PubMed ID: 23565205
[TBL] [Abstract][Full Text] [Related]
8. smallWig: parallel compression of RNA-seq WIG files.
Wang Z; Weissman T; Milenkovic O
Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
[TBL] [Abstract][Full Text] [Related]
9. NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types.
Lee S; Lee S; Ouellette S; Park WY; Lee EA; Park PJ
Nucleic Acids Res; 2017 Jun; 45(11):e103. PubMed ID: 28369524
[TBL] [Abstract][Full Text] [Related]
10. FastqPuri: high-performance preprocessing of RNA-seq data.
Pérez-Rubio P; Lottaz C; Engelmann JC
BMC Bioinformatics; 2019 May; 20(1):226. PubMed ID: 31053060
[TBL] [Abstract][Full Text] [Related]
11. EasyQC: Tool with Interactive User Interface for Efficient Next-Generation Sequencing Data Quality Control.
Rangamaran VR; Uppili B; Gopal D; Ramalingam K
J Comput Biol; 2018 Dec; 25(12):1301-1311. PubMed ID: 30204482
[No Abstract] [Full Text] [Related]
12. NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data.
Katta MA; Khan AW; Doddamani D; Thudi M; Varshney RK
PLoS One; 2015; 10(10):e0139868. PubMed ID: 26460497
[TBL] [Abstract][Full Text] [Related]
13. FastProNGS: fast preprocessing of next-generation sequencing reads.
Liu X; Yan Z; Wu C; Yang Y; Li X; Zhang G
BMC Bioinformatics; 2019 Jun; 20(1):345. PubMed ID: 31208325
[TBL] [Abstract][Full Text] [Related]
14. Fast all versus all genotype comparison using DNA/RNA sequencing data: method and workflow.
Eschrich SA; Yu X; Teer JK
BMC Bioinformatics; 2023 Apr; 24(1):164. PubMed ID: 37095442
[TBL] [Abstract][Full Text] [Related]
15. QPLOT: a quality assessment tool for next generation sequencing data.
Li B; Zhan X; Wing MK; Anderson P; Kang HM; Abecasis GR
Biomed Res Int; 2013; 2013():865181. PubMed ID: 24319692
[TBL] [Abstract][Full Text] [Related]
16. FastqCleaner: an interactive Bioconductor application for quality-control, filtering and trimming of FASTQ files.
Roser LG; Agüero F; Sánchez DO
BMC Bioinformatics; 2019 Jun; 20(1):361. PubMed ID: 31253077
[TBL] [Abstract][Full Text] [Related]
17. AUSPP: A universal short-read pre-processing package.
Gao L; Wu C; Liu L
J Bioinform Comput Biol; 2019 Dec; 17(6):1950037. PubMed ID: 32019418
[TBL] [Abstract][Full Text] [Related]
18. RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data.
Perkins P; Mazzoni-Putman S; Stepanova A; Alonso J; Heber S
BMC Genomics; 2019 Jun; 20(Suppl 5):422. PubMed ID: 31167636
[TBL] [Abstract][Full Text] [Related]
19. MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression.
Kim M; Zhang X; Ligo JG; Farnoud F; Veeravalli VV; Milenkovic O
BMC Bioinformatics; 2016 Feb; 17():94. PubMed ID: 26895947
[TBL] [Abstract][Full Text] [Related]
20. Introduction of the Python script STRinNGS for analysis of STR regions in FASTQ or BAM files and expansion of the Danish STR sequence database to 11 STRs.
Friis SL; Buchard A; Rockenbauer E; Børsting C; Morling N
Forensic Sci Int Genet; 2016 Mar; 21():68-75. PubMed ID: 26722765
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
