164 related articles for article (PubMed ID: 31418773)
1. LightDock goes information-driven.
Roel-Touris J; Bonvin AMJJ; Jiménez-García B
Bioinformatics; 2020 Feb; 36(3):950-952. PubMed ID: 31418773
[TBL] [Abstract][Full Text] [Related]
2. LightDock: a new multi-scale approach to protein-protein docking.
Jiménez-García B; Roel-Touris J; Romero-Durana M; Vidal M; Jiménez-González D; Fernández-Recio J
Bioinformatics; 2018 Jan; 34(1):49-55. PubMed ID: 28968719
[TBL] [Abstract][Full Text] [Related]
3. The LightDock Server: Artificial Intelligence-powered modeling of macromolecular interactions.
Jiménez-García B; Roel-Touris J; Barradas-Bautista D
Nucleic Acids Res; 2023 Jul; 51(W1):W298-W304. PubMed ID: 37140054
[TBL] [Abstract][Full Text] [Related]
4. Integrating ab initio and template-based algorithms for protein-protein complex structure prediction.
Vangaveti S; Vreven T; Zhang Y; Weng Z
Bioinformatics; 2020 Feb; 36(3):751-757. PubMed ID: 31393558
[TBL] [Abstract][Full Text] [Related]
5. PLIDflow: an open-source workflow for the online analysis of protein-ligand docking using galaxy.
Ulzurrun E; Duarte Y; Perez-Wohlfeil E; Gonzalez-Nilo F; Trelles O
Bioinformatics; 2020 Aug; 36(14):4203-4205. PubMed ID: 32415960
[TBL] [Abstract][Full Text] [Related]
6. Modeling Antibody-Antigen Complexes by Information-Driven Docking.
Ambrosetti F; Jiménez-García B; Roel-Touris J; Bonvin AMJJ
Structure; 2020 Jan; 28(1):119-129.e2. PubMed ID: 31727476
[TBL] [Abstract][Full Text] [Related]
7. Machine learning accelerates MD-based binding pose prediction between ligands and proteins.
Terayama K; Iwata H; Araki M; Okuno Y; Tsuda K
Bioinformatics; 2018 Mar; 34(5):770-778. PubMed ID: 29040432
[TBL] [Abstract][Full Text] [Related]
8. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels.
Vavra O; Filipovic J; Plhak J; Bednar D; Marques SM; Brezovsky J; Stourac J; Matyska L; Damborsky J
Bioinformatics; 2019 Dec; 35(23):4986-4993. PubMed ID: 31077297
[TBL] [Abstract][Full Text] [Related]
9. DockingPie: a consensus docking plugin for PyMOL.
Rosignoli S; Paiardini A
Bioinformatics; 2022 Sep; 38(17):4233-4234. PubMed ID: 35792827
[TBL] [Abstract][Full Text] [Related]
10. Vivarium: an interface and engine for integrative multiscale modeling in computational biology.
Agmon E; Spangler RK; Skalnik CJ; Poole W; Peirce SM; Morrison JH; Covert MW
Bioinformatics; 2022 Mar; 38(7):1972-1979. PubMed ID: 35134830
[TBL] [Abstract][Full Text] [Related]
11. farPPI: a webserver for accurate prediction of protein-ligand binding structures for small-molecule PPI inhibitors by MM/PB(GB)SA methods.
Wang Z; Wang X; Li Y; Lei T; Wang E; Li D; Kang Y; Zhu F; Hou T
Bioinformatics; 2019 May; 35(10):1777-1779. PubMed ID: 30329012
[TBL] [Abstract][Full Text] [Related]
12. gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.
Irrgang ME; Hays JM; Kasson PM
Bioinformatics; 2018 Nov; 34(22):3945-3947. PubMed ID: 29912282
[TBL] [Abstract][Full Text] [Related]
13. Container-based bioinformatics with Pachyderm.
Novella JA; Emami Khoonsari P; Herman S; Whitenack D; Capuccini M; Burman J; Kultima K; Spjuth O
Bioinformatics; 2019 Mar; 35(5):839-846. PubMed ID: 30101309
[TBL] [Abstract][Full Text] [Related]
14. On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.
Marín-López MA; Planas-Iglesias J; Aguirre-Plans J; Bonet J; Garcia-Garcia J; Fernandez-Fuentes N; Oliva B
Bioinformatics; 2018 Feb; 34(4):592-598. PubMed ID: 29028891
[TBL] [Abstract][Full Text] [Related]
15. SAnDReS: A Computational Tool for Docking.
Bitencourt-Ferreira G; de Azevedo WF
Methods Mol Biol; 2019; 2053():51-65. PubMed ID: 31452098
[TBL] [Abstract][Full Text] [Related]
16. Efficient flexible backbone protein-protein docking for challenging targets.
Marze NA; Roy Burman SS; Sheffler W; Gray JJ
Bioinformatics; 2018 Oct; 34(20):3461-3469. PubMed ID: 29718115
[TBL] [Abstract][Full Text] [Related]
17. TADOSS: computational estimation of tandem domain swap stability.
Lafita A; Tian P; Best RB; Bateman A
Bioinformatics; 2019 Jul; 35(14):2507-2508. PubMed ID: 30500878
[TBL] [Abstract][Full Text] [Related]
18. Limits and potential of combined folding and docking.
Pozzati G; Zhu W; Bassot C; Lamb J; Kundrotas P; Elofsson A
Bioinformatics; 2022 Jan; 38(4):954-961. PubMed ID: 34788800
[TBL] [Abstract][Full Text] [Related]
19. RRDB: a comprehensive and non-redundant benchmark for RNA-RNA docking and scoring.
Yan Y; Huang SY
Bioinformatics; 2018 Feb; 34(3):453-458. PubMed ID: 29028888
[TBL] [Abstract][Full Text] [Related]
20. ATPdock: a template-based method for ATP-specific protein-ligand docking.
Rao L; Jia NX; Hu J; Yu DJ; Zhang GJ
Bioinformatics; 2022 Jan; 38(2):556-558. PubMed ID: 34546290
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]