142 related articles for article (PubMed ID: 31423613)
1. GalaxyDock3: Protein-ligand docking that considers the full ligand conformational flexibility.
Yang J; Baek M; Seok C
J Comput Chem; 2019 Dec; 40(31):2739-2748. PubMed ID: 31423613
[TBL] [Abstract][Full Text] [Related]
2. GalaxyDock2: protein-ligand docking using beta-complex and global optimization.
Shin WH; Kim JK; Kim DS; Seok C
J Comput Chem; 2013 Nov; 34(30):2647-56. PubMed ID: 24108416
[TBL] [Abstract][Full Text] [Related]
3. GalaxyDock BP2 score: a hybrid scoring function for accurate protein-ligand docking.
Baek M; Shin WH; Chung HW; Seok C
J Comput Aided Mol Des; 2017 Jul; 31(7):653-666. PubMed ID: 28623486
[TBL] [Abstract][Full Text] [Related]
4. GalaxyDock: protein-ligand docking with flexible protein side-chains.
Shin WH; Seok C
J Chem Inf Model; 2012 Dec; 52(12):3225-32. PubMed ID: 23198780
[TBL] [Abstract][Full Text] [Related]
5. GalaxyTongDock: Symmetric and asymmetric ab initio protein-protein docking web server with improved energy parameters.
Park T; Baek M; Lee H; Seok C
J Comput Chem; 2019 Oct; 40(27):2413-2417. PubMed ID: 31173387
[TBL] [Abstract][Full Text] [Related]
6. Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility.
Chen H; Sun Y; Shen Y
Proteins; 2017 Mar; 85(3):544-556. PubMed ID: 27862345
[TBL] [Abstract][Full Text] [Related]
7. A non-redundant protein-RNA docking benchmark version 2.0.
Nithin C; Mukherjee S; Bahadur RP
Proteins; 2017 Feb; 85(2):256-267. PubMed ID: 27862282
[TBL] [Abstract][Full Text] [Related]
8. Evaluation of GalaxyDock Based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies.
Shin WH; Lee GR; Seok C
J Chem Inf Model; 2016 Jun; 56(6):988-95. PubMed ID: 26583962
[TBL] [Abstract][Full Text] [Related]
9. GalaxyDock2-HEME: Protein-ligand docking for heme proteins.
Lee C; Yang J; Kwon S; Seok C
J Comput Chem; 2023 May; 44(14):1369-1380. PubMed ID: 36809651
[TBL] [Abstract][Full Text] [Related]
10. PSOVina: The hybrid particle swarm optimization algorithm for protein-ligand docking.
Ng MC; Fong S; Siu SW
J Bioinform Comput Biol; 2015 Jun; 13(3):1541007. PubMed ID: 25800162
[TBL] [Abstract][Full Text] [Related]
11. istar: a web platform for large-scale protein-ligand docking.
Li H; Leung KS; Ballester PJ; Wong MH
PLoS One; 2014; 9(1):e85678. PubMed ID: 24475049
[TBL] [Abstract][Full Text] [Related]
12. Advances in Docking.
Sulimov VB; Kutov DC; Sulimov AV
Curr Med Chem; 2019; 26(42):7555-7580. PubMed ID: 30182836
[TBL] [Abstract][Full Text] [Related]
13. GalaxyRefineComplex: Refinement of protein-protein complex model structures driven by interface repacking.
Heo L; Lee H; Seok C
Sci Rep; 2016 Aug; 6():32153. PubMed ID: 27535582
[TBL] [Abstract][Full Text] [Related]
14. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
[TBL] [Abstract][Full Text] [Related]
15. CSAlign and CSAlign-Dock: Structure alignment of ligands considering full flexibility and application to protein-ligand docking.
Kwon S; Seok C
Comput Struct Biotechnol J; 2023; 21():1-10. PubMed ID: 36514334
[TBL] [Abstract][Full Text] [Related]
16. Dynamic Docking of Macrocycles in Bound and Unbound Protein Structures with DynaDock.
Meixner M; Zachmann M; Metzler S; Scheerer J; Zacharias M; Antes I
J Chem Inf Model; 2022 Jul; 62(14):3426-3441. PubMed ID: 35796228
[TBL] [Abstract][Full Text] [Related]
17. Galaxy7TM: flexible GPCR-ligand docking by structure refinement.
Lee GR; Seok C
Nucleic Acids Res; 2016 Jul; 44(W1):W502-6. PubMed ID: 27131365
[TBL] [Abstract][Full Text] [Related]
18. Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins.
Devaurs D; Antunes DA; Hall-Swan S; Mitchell N; Moll M; Lizée G; Kavraki LE
BMC Mol Cell Biol; 2019 Sep; 20(1):42. PubMed ID: 31488048
[TBL] [Abstract][Full Text] [Related]
19. HarmonyDOCK: the structural analysis of poses in protein-ligand docking.
Plewczynski D; Philips A; Von Grotthuss M; Rychlewski L; Ginalski K
J Comput Biol; 2014 Mar; 21(3):247-56. PubMed ID: 21091053
[TBL] [Abstract][Full Text] [Related]
20. GalaxyPepDock: a protein-peptide docking tool based on interaction similarity and energy optimization.
Lee H; Heo L; Lee MS; Seok C
Nucleic Acids Res; 2015 Jul; 43(W1):W431-5. PubMed ID: 25969449
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]