BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

145 related articles for article (PubMed ID: 31432077)

  • 1. CRDS: Consensus Reverse Docking System for target fishing.
    Lee A; Kim D
    Bioinformatics; 2020 Feb; 36(3):959-960. PubMed ID: 31432077
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser.
    Kochnev Y; Hellemann E; Cassidy KC; Durrant JD
    Bioinformatics; 2020 Aug; 36(16):4513-4515. PubMed ID: 32559277
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The scoring bias in reverse docking and the score normalization strategy to improve success rate of target fishing.
    Luo Q; Zhao L; Hu J; Jin H; Liu Z; Zhang L
    PLoS One; 2017; 12(2):e0171433. PubMed ID: 28196116
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Application of reverse docking for target prediction of marine compounds with anti-tumor activity.
    Chen F; Wang Z; Wang C; Xu Q; Liang J; Xu X; Yang J; Wang C; Jiang T; Yu R
    J Mol Graph Model; 2017 Oct; 77():372-377. PubMed ID: 28950183
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comprehensive evaluation of ten docking programs on a diverse set of protein-ligand complexes: the prediction accuracy of sampling power and scoring power.
    Wang Z; Sun H; Yao X; Li D; Xu L; Li Y; Tian S; Hou T
    Phys Chem Chem Phys; 2016 May; 18(18):12964-75. PubMed ID: 27108770
    [TBL] [Abstract][Full Text] [Related]  

  • 6. METADOCK 2: a high-throughput parallel metaheuristic scheme for molecular docking.
    Imbernón B; Serrano A; Bueno-Crespo A; Abellán JL; Pérez-Sánchez H; Cecilia JM
    Bioinformatics; 2021 Jul; 37(11):1515-1520. PubMed ID: 31960899
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DockingPie: a consensus docking plugin for PyMOL.
    Rosignoli S; Paiardini A
    Bioinformatics; 2022 Sep; 38(17):4233-4234. PubMed ID: 35792827
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Towards Effective Consensus Scoring in Structure-Based Virtual Screening.
    Nhat Phuong D; Flower DR; Chattopadhyay S; Chattopadhyay AK
    Interdiscip Sci; 2023 Mar; 15(1):131-145. PubMed ID: 36550341
    [TBL] [Abstract][Full Text] [Related]  

  • 9. FRODOCK 2.0: fast protein-protein docking server.
    Ramírez-Aportela E; López-Blanco JR; Chacón P
    Bioinformatics; 2016 Aug; 32(15):2386-8. PubMed ID: 27153583
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Accelerating AutoDock Vina with GPUs.
    Tang S; Chen R; Lin M; Lin Q; Zhu Y; Ding J; Hu H; Ling M; Wu J
    Molecules; 2022 May; 27(9):. PubMed ID: 35566391
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ReverseDock: a web server for blind docking of a single ligand to multiple protein targets using AutoDock Vina.
    Krause F; Voigt K; Di Ventura B; Öztürk MA
    Front Mol Biosci; 2023; 10():1243970. PubMed ID: 37881441
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification of Potential Antituberculosis Drugs Through Docking and Virtual Screening.
    Anand R
    Interdiscip Sci; 2018 Jun; 10(2):419-429. PubMed ID: 27147082
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SAnDReS a Computational Tool for Statistical Analysis of Docking Results and Development of Scoring Functions.
    Xavier MM; Heck GS; Avila MB; Levin NMB; Pintro VO; Carvalho NL; Azevedo WF
    Comb Chem High Throughput Screen; 2016; 19(10):801-812. PubMed ID: 27686428
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Extensive Reliability Evaluation of Docking-Based Target-Fishing Strategies.
    Lapillo M; Tuccinardi T; Martinelli A; Macchia M; Giordano A; Poli G
    Int J Mol Sci; 2019 Feb; 20(5):. PubMed ID: 30818741
    [TBL] [Abstract][Full Text] [Related]  

  • 15. COVID-19 Docking Server: a meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19.
    Kong R; Yang G; Xue R; Liu M; Wang F; Hu J; Guo X; Chang S
    Bioinformatics; 2020 Dec; 36(20):5109-5111. PubMed ID: 32692801
    [TBL] [Abstract][Full Text] [Related]  

  • 16. KRDS: a web server for evaluating drug resistance mutations in kinases by molecular docking.
    Lee A; Hong S; Kim D
    J Cheminform; 2018 Apr; 10(1):20. PubMed ID: 29633047
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparing sixteen scoring functions for predicting biological activities of ligands for protein targets.
    Xu W; Lucke AJ; Fairlie DP
    J Mol Graph Model; 2015 Apr; 57():76-88. PubMed ID: 25682361
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Vinardo: A Scoring Function Based on Autodock Vina Improves Scoring, Docking, and Virtual Screening.
    Quiroga R; Villarreal MA
    PLoS One; 2016; 11(5):e0155183. PubMed ID: 27171006
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Identification of Phytochemicals Targeting c-Met Kinase Domain using Consensus Docking and Molecular Dynamics Simulation Studies.
    Aliebrahimi S; Montasser Kouhsari S; Ostad SN; Arab SS; Karami L
    Cell Biochem Biophys; 2018 Jun; 76(1-2):135-145. PubMed ID: 28852971
    [TBL] [Abstract][Full Text] [Related]  

  • 20. KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions.
    Kadukova M; Machado KDS; Chacón P; Grudinin S
    Bioinformatics; 2021 May; 37(7):943-950. PubMed ID: 32840574
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.