152 related articles for article (PubMed ID: 31451449)
1. Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS.
Afik S; Raulet G; Yosef N
Life Sci Alliance; 2019 Aug; 2(4):. PubMed ID: 31451449
[TBL] [Abstract][Full Text] [Related]
2. High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes.
Singh M; Al-Eryani G; Carswell S; Ferguson JM; Blackburn J; Barton K; Roden D; Luciani F; Giang Phan T; Junankar S; Jackson K; Goodnow CC; Smith MA; Swarbrick A
Nat Commun; 2019 Jul; 10(1):3120. PubMed ID: 31311926
[TBL] [Abstract][Full Text] [Related]
3. Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer.
Mose LE; Selitsky SR; Bixby LM; Marron DL; Iglesia MD; Serody JS; Perou CM; Vincent BG; Parker JS
Bioinformatics; 2016 Dec; 32(24):3729-3734. PubMed ID: 27559159
[TBL] [Abstract][Full Text] [Related]
4. TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data.
Song L; Cohen D; Ouyang Z; Cao Y; Hu X; Liu XS
Nat Methods; 2021 Jun; 18(6):627-630. PubMed ID: 33986545
[TBL] [Abstract][Full Text] [Related]
5. B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle.
Rizzetto S; Koppstein DNP; Samir J; Singh M; Reed JH; Cai CH; Lloyd AR; Eltahla AA; Goodnow CC; Luciani F
Bioinformatics; 2018 Aug; 34(16):2846-2847. PubMed ID: 29659703
[TBL] [Abstract][Full Text] [Related]
6. FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells.
Attaf N; Cervera-Marzal I; Dong C; Gil L; Renand A; Spinelli L; Milpied P
Front Immunol; 2020; 11():216. PubMed ID: 32194545
[TBL] [Abstract][Full Text] [Related]
7. BASIC: BCR assembly from single cells.
Canzar S; Neu KE; Tang Q; Wilson PC; Khan AA
Bioinformatics; 2017 Feb; 33(3):425-427. PubMed ID: 28172415
[TBL] [Abstract][Full Text] [Related]
8. Antigen Receptor Sequence Reconstruction and Clonality Inference from scRNA-Seq Data.
Lindeman I; Stubbington MJT
Methods Mol Biol; 2019; 1935():223-249. PubMed ID: 30758830
[TBL] [Abstract][Full Text] [Related]
9. Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments.
Yao Y; Zia A; Wyrożemski Ł; Lindeman I; Sandve GK; Qiao SW
PLoS One; 2018; 13(12):e0208484. PubMed ID: 30517183
[TBL] [Abstract][Full Text] [Related]
10. Deep generative modeling for single-cell transcriptomics.
Lopez R; Regier J; Cole MB; Jordan MI; Yosef N
Nat Methods; 2018 Dec; 15(12):1053-1058. PubMed ID: 30504886
[TBL] [Abstract][Full Text] [Related]
11. High-Throughput Mapping of B Cell Receptor Sequences to Antigen Specificity.
Setliff I; Shiakolas AR; Pilewski KA; Murji AA; Mapengo RE; Janowska K; Richardson S; Oosthuysen C; Raju N; Ronsard L; Kanekiyo M; Qin JS; Kramer KJ; Greenplate AR; McDonnell WJ; Graham BS; Connors M; Lingwood D; Acharya P; Morris L; Georgiev IS
Cell; 2019 Dec; 179(7):1636-1646.e15. PubMed ID: 31787378
[TBL] [Abstract][Full Text] [Related]
12. The impact of read length on quantification of differentially expressed genes and splice junction detection.
Chhangawala S; Rudy G; Mason CE; Rosenfeld JA
Genome Biol; 2015 Jun; 16(1):131. PubMed ID: 26100517
[TBL] [Abstract][Full Text] [Related]
13. Impact of sequencing depth and read length on single cell RNA sequencing data of T cells.
Rizzetto S; Eltahla AA; Lin P; Bull R; Lloyd AR; Ho JWK; Venturi V; Luciani F
Sci Rep; 2017 Oct; 7(1):12781. PubMed ID: 28986563
[TBL] [Abstract][Full Text] [Related]
14. B cell phylogenetics in the single cell era.
Hoehn KB; Kleinstein SH
Trends Immunol; 2024 Jan; 45(1):62-74. PubMed ID: 38151443
[TBL] [Abstract][Full Text] [Related]
15. Language model-based B cell receptor sequence embeddings can effectively encode receptor specificity.
Wang M; Patsenker J; Li H; Kluger Y; Kleinstein SH
Nucleic Acids Res; 2024 Jan; 52(2):548-557. PubMed ID: 38109302
[TBL] [Abstract][Full Text] [Related]
16. Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq.
Redmond D; Poran A; Elemento O
Genome Med; 2016 Jul; 8(1):80. PubMed ID: 27460926
[TBL] [Abstract][Full Text] [Related]
17. Reconstructing B cell lineage trees with minimum spanning tree and genotype abundances.
Abdollahi N; Jeusset L; de Septenville A; Davi F; Bernardes JS
BMC Bioinformatics; 2023 Feb; 24(1):70. PubMed ID: 36849917
[TBL] [Abstract][Full Text] [Related]
18. RNase H-dependent PCR-enabled T-cell receptor sequencing for highly specific and efficient targeted sequencing of T-cell receptor mRNA for single-cell and repertoire analysis.
Li S; Sun J; Allesøe R; Datta K; Bao Y; Oliveira G; Forman J; Jin R; Olsen LR; Keskin DB; Shukla SA; Wu CJ; Livak KJ
Nat Protoc; 2019 Aug; 14(8):2571-2594. PubMed ID: 31341290
[TBL] [Abstract][Full Text] [Related]
19. Integrated sequencing of exome and mRNA of large-sized single cells.
Wang LY; Guo J; Cao W; Zhang M; He J; Li Z
Sci Rep; 2018 Jan; 8(1):384. PubMed ID: 29321653
[TBL] [Abstract][Full Text] [Related]
20. A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments.
Bansal V
BMC Bioinformatics; 2017 Mar; 18(Suppl 3):43. PubMed ID: 28361665
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]