BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 31452108)

  • 1. Web Services for Molecular Docking Simulations.
    da Silveira NJF; Pereira FSS; Elias TC; Henrique T
    Methods Mol Biol; 2019; 2053():221-229. PubMed ID: 31452108
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Docking with SwissDock.
    Bitencourt-Ferreira G; de Azevedo WF
    Methods Mol Biol; 2019; 2053():189-202. PubMed ID: 31452106
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular Docking Simulations with ArgusLab.
    Bitencourt-Ferreira G; de Azevedo WF
    Methods Mol Biol; 2019; 2053():203-220. PubMed ID: 31452107
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SAnDReS: A Computational Tool for Docking.
    Bitencourt-Ferreira G; de Azevedo WF
    Methods Mol Biol; 2019; 2053():51-65. PubMed ID: 31452098
    [TBL] [Abstract][Full Text] [Related]  

  • 5. How Docking Programs Work.
    Bitencourt-Ferreira G; de Azevedo WF
    Methods Mol Biol; 2019; 2053():35-50. PubMed ID: 31452097
    [TBL] [Abstract][Full Text] [Related]  

  • 6. AutoDock and AutoDockTools for Protein-Ligand Docking: Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1(BACE1) as a Case Study.
    El-Hachem N; Haibe-Kains B; Khalil A; Kobeissy FH; Nemer G
    Methods Mol Biol; 2017; 1598():391-403. PubMed ID: 28508374
    [TBL] [Abstract][Full Text] [Related]  

  • 7. istar: a web platform for large-scale protein-ligand docking.
    Li H; Leung KS; Ballester PJ; Wong MH
    PLoS One; 2014; 9(1):e85678. PubMed ID: 24475049
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Advancements in Docking and Molecular Dynamics Simulations Towards Ligand-receptor Interactions and Structure-function Relationships.
    Naqvi AAT; Mohammad T; Hasan GM; Hassan MI
    Curr Top Med Chem; 2018; 18(20):1755-1768. PubMed ID: 30360721
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Docking with AutoDock4.
    Bitencourt-Ferreira G; Pintro VO; de Azevedo WF
    Methods Mol Biol; 2019; 2053():125-148. PubMed ID: 31452103
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Highly Flexible Ligand Docking: Benchmarking of the DockThor Program on the LEADS-PEP Protein-Peptide Data Set.
    Santos KB; Guedes IA; Karl ALM; Dardenne LE
    J Chem Inf Model; 2020 Feb; 60(2):667-683. PubMed ID: 31922754
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molegro Virtual Docker for Docking.
    Bitencourt-Ferreira G; de Azevedo WF
    Methods Mol Biol; 2019; 2053():149-167. PubMed ID: 31452104
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Docking with GemDock.
    Bitencourt-Ferreira G; de Azevedo WF
    Methods Mol Biol; 2019; 2053():169-188. PubMed ID: 31452105
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Machine Learning to Predict Binding Affinity.
    Bitencourt-Ferreira G; de Azevedo WF
    Methods Mol Biol; 2019; 2053():251-273. PubMed ID: 31452110
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
    Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
    PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.
    Geng C; Narasimhan S; Rodrigues JP; Bonvin AM
    Methods Mol Biol; 2017; 1561():109-138. PubMed ID: 28236236
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Nonlinear scoring functions for similarity-based ligand docking and binding affinity prediction.
    Brylinski M
    J Chem Inf Model; 2013 Nov; 53(11):3097-112. PubMed ID: 24171431
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Exploring the Stability of Ligand Binding Modes to Proteins by Molecular Dynamics Simulations: A Cross-docking Study.
    Liu K; Kokubo H
    J Chem Inf Model; 2017 Oct; 57(10):2514-2522. PubMed ID: 28902511
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HarmonyDOCK: the structural analysis of poses in protein-ligand docking.
    Plewczynski D; Philips A; Von Grotthuss M; Rychlewski L; Ginalski K
    J Comput Biol; 2014 Mar; 21(3):247-56. PubMed ID: 21091053
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DOCK/PIERR: web server for structure prediction of protein-protein complexes.
    Viswanath S; Ravikant DV; Elber R
    Methods Mol Biol; 2014; 1137():199-207. PubMed ID: 24573483
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Highly Flexible Protein-Peptide Docking Using CABS-Dock.
    Ciemny MP; Kurcinski M; Kozak KJ; Kolinski A; Kmiecik S
    Methods Mol Biol; 2017; 1561():69-94. PubMed ID: 28236234
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.