These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. PhagoSight: an open-source MATLAB® package for the analysis of fluorescent neutrophil and macrophage migration in a zebrafish model. Henry KM; Pase L; Ramos-Lopez CF; Lieschke GJ; Renshaw SA; Reyes-Aldasoro CC PLoS One; 2013; 8(8):e72636. PubMed ID: 24023630 [TBL] [Abstract][Full Text] [Related]
5. TRACMIT: An effective pipeline for tracking and analyzing cells on micropatterns through mitosis. Burri O; Wolf B; Seitz A; Gönczy P PLoS One; 2017; 12(7):e0179752. PubMed ID: 28746386 [TBL] [Abstract][Full Text] [Related]
6. PiQSARS: A pipeline for quantitative and statistical analyses of ratiometric fluorescent biosensors. Lévy E; Jaffrézic F; Laloë D; Rezaei H; Huang ME; Béringue V; Martin D; Vernis L MethodsX; 2020; 7():101034. PubMed ID: 32953466 [TBL] [Abstract][Full Text] [Related]
7. Semi-automated object tracking methods in biological imaging. Davis MA; Pražský O; Sysko LR Curr Protoc Cytom; 2015 Jan; 71():12.38.1-12.38.21. PubMed ID: 25559222 [TBL] [Abstract][Full Text] [Related]
12. Identification of apoptosis and macrophage migration events in paraquat-induced oxidative stress using a zebrafish model. Wang Q; Liu S; Hu D; Wang Z; Wang L; Wu T; Wu Z; Mohan C; Peng A Life Sci; 2016 Jul; 157():116-124. PubMed ID: 27288846 [TBL] [Abstract][Full Text] [Related]
13. An open-source solution for advanced imaging flow cytometry data analysis using machine learning. Hennig H; Rees P; Blasi T; Kamentsky L; Hung J; Dao D; Carpenter AE; Filby A Methods; 2017 Jan; 112():201-210. PubMed ID: 27594698 [TBL] [Abstract][Full Text] [Related]
14. Accurate, precise modeling of cell proliferation kinetics from time-lapse imaging and automated image analysis of agar yeast culture arrays. Shah NA; Laws RJ; Wardman B; Zhao LP; Hartman JL BMC Syst Biol; 2007 Jan; 1():3. PubMed ID: 17408510 [TBL] [Abstract][Full Text] [Related]
15. Realistic volumetric-approach to simulate transcranial electric stimulation-ROAST-a fully automated open-source pipeline. Huang Y; Datta A; Bikson M; Parra LC J Neural Eng; 2019 Jul; 16(5):056006. PubMed ID: 31071686 [TBL] [Abstract][Full Text] [Related]
16. Detection and Automated Analysis of Single Transcripts at Subcellular Resolution in Zebrafish Embryos. Stapel LC; Broaddus C; Vastenhouw NL Methods Mol Biol; 2018; 1649():143-162. PubMed ID: 29130195 [TBL] [Abstract][Full Text] [Related]
17. Volume measurements of individual muscles in human quadriceps femoris using atlas-based segmentation approaches. Le Troter A; Fouré A; Guye M; Confort-Gouny S; Mattei JP; Gondin J; Salort-Campana E; Bendahan D MAGMA; 2016 Apr; 29(2):245-57. PubMed ID: 26983429 [TBL] [Abstract][Full Text] [Related]
18. MATtrack: A MATLAB-Based Quantitative Image Analysis Platform for Investigating Real-Time Photo-Converted Fluorescent Signals in Live Cells. Courtney J; Woods E; Scholz D; Hall WW; Gautier VW PLoS One; 2015; 10(10):e0140209. PubMed ID: 26485569 [TBL] [Abstract][Full Text] [Related]
19. APPIAN: Automated Pipeline for PET Image Analysis. Funck T; Larcher K; Toussaint PJ; Evans AC; Thiel A Front Neuroinform; 2018; 12():64. PubMed ID: 30337866 [TBL] [Abstract][Full Text] [Related]
20. CAST: An automated segmentation and tracking tool for the analysis of transcriptional kinetics from single-cell time-lapse recordings. Blanchoud S; Nicolas D; Zoller B; Tidin O; Naef F Methods; 2015 Sep; 85():3-11. PubMed ID: 25934263 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]