These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
274 related articles for article (PubMed ID: 31477010)
1. Bioinformatics and DNA-extraction strategies to reliably detect genetic variants from FFPE breast tissue samples. Bhagwate AV; Liu Y; Winham SJ; McDonough SJ; Stallings-Mann ML; Heinzen EP; Davila JI; Vierkant RA; Hoskin TL; Frost M; Carter JM; Radisky DC; Cunningham JM; Degnim AC; Wang C BMC Genomics; 2019 Sep; 20(1):689. PubMed ID: 31477010 [TBL] [Abstract][Full Text] [Related]
2. Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples. Bonnet E; Moutet ML; Baulard C; Bacq-Daian D; Sandron F; Mesrob L; Fin B; Delépine M; Palomares MA; Jubin C; Blanché H; Meyer V; Boland A; Olaso R; Deleuze JF PLoS One; 2018; 13(4):e0195471. PubMed ID: 29621323 [TBL] [Abstract][Full Text] [Related]
3. Using postmortem formalin fixed paraffin-embedded tissues for molecular testing of sudden cardiac death: A cautionary tale of utility and limitations. Lin Y; Gryazeva T; Wang D; Zhou B; Um SY; Eng LS; Ruiter K; Rojas L; Williams N; Sampson BA; Tang Y Forensic Sci Int; 2020 Mar; 308():110177. PubMed ID: 32155531 [TBL] [Abstract][Full Text] [Related]
4. Systematic review and feasibility study on pre-analytical factors and genomic analyses on archival formalin-fixed paraffin-embedded breast cancer tissue. Salgkamis D; Sifakis EG; Agartz S; Wirta V; Hartman J; Bergh J; Foukakis T; Matikas A; Zerdes I Sci Rep; 2024 Aug; 14(1):18275. PubMed ID: 39107471 [TBL] [Abstract][Full Text] [Related]
5. Targeted Next Generation Sequencing as a Reliable Diagnostic Assay for the Detection of Somatic Mutations in Tumours Using Minimal DNA Amounts from Formalin Fixed Paraffin Embedded Material. de Leng WW; Gadellaa-van Hooijdonk CG; Barendregt-Smouter FA; Koudijs MJ; Nijman I; Hinrichs JW; Cuppen E; van Lieshout S; Loberg RD; de Jonge M; Voest EE; de Weger RA; Steeghs N; Langenberg MH; Sleijfer S; Willems SM; Lolkema MP PLoS One; 2016; 11(2):e0149405. PubMed ID: 26919633 [TBL] [Abstract][Full Text] [Related]
6. The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues. Marczyk M; Fu C; Lau R; Du L; Trevarton AJ; Sinn BV; Gould RE; Pusztai L; Hatzis C; Symmans WF BMC Cancer; 2019 Dec; 19(1):1189. PubMed ID: 31805884 [TBL] [Abstract][Full Text] [Related]
7. Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data. Karimnezhad A; Palidwor GA; Thavorn K; Stewart DJ; Campbell PA; Lo B; Perkins TJ BMC Med Genomics; 2020 Oct; 13(1):156. PubMed ID: 33059707 [TBL] [Abstract][Full Text] [Related]
8. Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue. Hedegaard J; Thorsen K; Lund MK; Hein AM; Hamilton-Dutoit SJ; Vang S; Nordentoft I; Birkenkamp-Demtröder K; Kruhøffer M; Hager H; Knudsen B; Andersen CL; Sørensen KD; Pedersen JS; Ørntoft TF; Dyrskjøt L PLoS One; 2014; 9(5):e98187. PubMed ID: 24878701 [TBL] [Abstract][Full Text] [Related]
9. Whole exome sequencing (WES) on formalin-fixed, paraffin-embedded (FFPE) tumor tissue in gastrointestinal stromal tumors (GIST). Astolfi A; Urbini M; Indio V; Nannini M; Genovese CG; Santini D; Saponara M; Mandrioli A; Ercolani G; Brandi G; Biasco G; Pantaleo MA BMC Genomics; 2015 Nov; 16():892. PubMed ID: 26531060 [TBL] [Abstract][Full Text] [Related]
10. Mutational profiling of micro-dissected pre-malignant lesions from archived specimens. Nachmanson D; Steward J; Yao H; Officer A; Jeong E; O'Keefe TJ; Hasteh F; Jepsen K; Hirst GL; Esserman LJ; Borowsky AD; Harismendy O BMC Med Genomics; 2020 Nov; 13(1):173. PubMed ID: 33208147 [TBL] [Abstract][Full Text] [Related]
11. Comparison of whole-exome sequencing of matched fresh and formalin fixed paraffin embedded melanoma tumours: implications for clinical decision making. De Paoli-Iseppi R; Johansson PA; Menzies AM; Dias KR; Pupo GM; Kakavand H; Wilmott JS; Mann GJ; Hayward NK; Dinger ME; Long GV; Scolyer RA Pathology; 2016 Apr; 48(3):261-6. PubMed ID: 27020503 [TBL] [Abstract][Full Text] [Related]
12. Quality control material for the detection of somatic mutations in fixed clinical specimens by next-generation sequencing. Dumur CI; Almenara JA; Powers CN; Ferreira-Gonzalez A Diagn Pathol; 2015 Sep; 10():169. PubMed ID: 26376646 [TBL] [Abstract][Full Text] [Related]
13. Evaluation of clinical formalin-fixed paraffin-embedded tissue quality for targeted-bisulfite sequencing. Ohmomo H; Komaki S; Ono K; Sutoh Y; Hachiya T; Arai E; Fujimoto H; Yoshida T; Kanai Y; Sasaki M; Shimizu A Pathol Int; 2021 Feb; 71(2):135-140. PubMed ID: 33333623 [TBL] [Abstract][Full Text] [Related]
14. Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics. Munchel S; Hoang Y; Zhao Y; Cottrell J; Klotzle B; Godwin AK; Koestler D; Beyerlein P; Fan JB; Bibikova M; Chien J Oncotarget; 2015 Sep; 6(28):25943-61. PubMed ID: 26305677 [TBL] [Abstract][Full Text] [Related]
15. Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue. Mittempergher L; de Ronde JJ; Nieuwland M; Kerkhoven RM; Simon I; Rutgers EJ; Wessels LF; Van't Veer LJ PLoS One; 2011 Feb; 6(2):e17163. PubMed ID: 21347257 [TBL] [Abstract][Full Text] [Related]
16. Performance comparison of two commercial human whole-exome capture systems on formalin-fixed paraffin-embedded lung adenocarcinoma samples. Bonfiglio S; Vanni I; Rossella V; Truini A; Lazarevic D; Dal Bello MG; Alama A; Mora M; Rijavec E; Genova C; Cittaro D; Grossi F; Coco S BMC Cancer; 2016 Aug; 16(1):692. PubMed ID: 27578032 [TBL] [Abstract][Full Text] [Related]
17. Evaluation of two highly-multiplexed custom panels for massively parallel semiconductor sequencing on paraffin DNA. Kotoula V; Lyberopoulou A; Papadopoulou K; Charalambous E; Alexopoulou Z; Gakou C; Lakis S; Tsolaki E; Lilakos K; Fountzilas G PLoS One; 2015; 10(6):e0128818. PubMed ID: 26039550 [TBL] [Abstract][Full Text] [Related]
18. Alternative Tissue Fixation Protocols Dramatically Reduce the Impact of DNA Artifacts, Unraveling the Interpretation of Clinical Comprehensive Genomic Profiling. Berrino E; Bellomo SE; Chesta A; Detillo P; Bragoni A; Gagliardi A; Naccarati A; Cereda M; Witel G; Sapino A; Bussolati B; Bussolati G; Marchiò C Lab Invest; 2024 Jan; 104(1):100280. PubMed ID: 38345263 [TBL] [Abstract][Full Text] [Related]
19. Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens. Yost SE; Smith EN; Schwab RB; Bao L; Jung H; Wang X; Voest E; Pierce JP; Messer K; Parker BA; Harismendy O; Frazer KA Nucleic Acids Res; 2012 Aug; 40(14):e107. PubMed ID: 22492626 [TBL] [Abstract][Full Text] [Related]
20. DEEPOMICS FFPE, a deep neural network model, identifies DNA sequencing artifacts from formalin fixed paraffin embedded tissue with high accuracy. Heo DH; Kim I; Seo H; Kim SG; Kim M; Park J; Park H; Kang S; Kim J; Paik S; Hong SE Sci Rep; 2024 Jan; 14(1):2559. PubMed ID: 38297116 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]