These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

233 related articles for article (PubMed ID: 31477158)

  • 1. MPRAnalyze: statistical framework for massively parallel reporter assays.
    Ashuach T; Fischer DS; Kreimer A; Ahituv N; Theis FJ; Yosef N
    Genome Biol; 2019 Sep; 20(1):183. PubMed ID: 31477158
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays.
    Movva R; Greenside P; Marinov GK; Nair S; Shrikumar A; Kundaje A
    PLoS One; 2019; 14(6):e0218073. PubMed ID: 31206543
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A systematic evaluation of the design and context dependencies of massively parallel reporter assays.
    Klein JC; Agarwal V; Inoue F; Keith A; Martin B; Kircher M; Ahituv N; Shendure J
    Nat Methods; 2020 Nov; 17(11):1083-1091. PubMed ID: 33046894
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Statistical considerations for the analysis of massively parallel reporter assays data.
    Qiao D; Zigler CM; Cho MH; Silverman EK; Zhou X; Castaldi PJ; Laird NH
    Genet Epidemiol; 2020 Oct; 44(7):785-794. PubMed ID: 32681690
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Meta-analysis of massively parallel reporter assays enables prediction of regulatory function across cell types.
    Kreimer A; Yan Z; Ahituv N; Yosef N
    Hum Mutat; 2019 Sep; 40(9):1299-1313. PubMed ID: 31131957
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Design and Analysis of Massively Parallel Reporter Assays Using FORECAST.
    Gilliot PA; Gorochowski TE
    Methods Mol Biol; 2023; 2553():41-56. PubMed ID: 36227538
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bayesian modelling of high-throughput sequencing assays with malacoda.
    Ghazi AR; Kong X; Chen ES; Edelstein LC; Shaw CA
    PLoS Comput Biol; 2020 Jul; 16(7):e1007504. PubMed ID: 32692749
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Sequence-based correction of barcode bias in massively parallel reporter assays.
    Lee D; Kapoor A; Lee C; Mudgett M; Beer MA; Chakravarti A
    Genome Res; 2021 Sep; 31(9):1638-1645. PubMed ID: 34285053
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Linear models enable powerful differential activity analysis in massively parallel reporter assays.
    Myint L; Avramopoulos DG; Goff LA; Hansen KD
    BMC Genomics; 2019 Mar; 20(1):209. PubMed ID: 30866806
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The Search for and Functional Analysis of Genetic Variants in microRNA-Binding Sites using Massively Parallel Reporter Assay.
    Rykova EY; Ershov NI; Degtyareva AO; Bryzgalov LO; Lushnikova EL
    Bull Exp Biol Med; 2024 Mar; 176(5):595-598. PubMed ID: 38724816
    [TBL] [Abstract][Full Text] [Related]  

  • 11. QuASAR-MPRA: accurate allele-specific analysis for massively parallel reporter assays.
    Kalita CA; Moyerbrailean GA; Brown C; Wen X; Luca F; Pique-Regi R
    Bioinformatics; 2018 Mar; 34(5):787-794. PubMed ID: 29028988
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Focus on your locus with a massively parallel reporter assay.
    McAfee JC; Bell JL; Krupa O; Matoba N; Stein JL; Won H
    J Neurodev Disord; 2022 Sep; 14(1):50. PubMed ID: 36085003
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Effective design and inference for cell sorting and sequencing based massively parallel reporter assays.
    Gilliot PA; Gorochowski TE
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37084251
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Massively parallel reporter assay: a novel technique for analyzing the regulation of gene expression.
    Yuan M; Li H; Wang SZ
    Yi Chuan; 2023 Oct; 45(10):859-873. PubMed ID: 37872110
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Deep learning-assisted genome-wide characterization of massively parallel reporter assays.
    Lu F; Sossin A; Abell N; Montgomery SB; He Z
    Nucleic Acids Res; 2022 Nov; 50(20):11442-11454. PubMed ID: 36350674
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A genome-integrated massively parallel reporter assay reveals DNA sequence determinants of cis-regulatory activity in neural cells.
    Maricque BB; Dougherty JD; Cohen BA
    Nucleic Acids Res; 2017 Feb; 45(4):e16. PubMed ID: 28204611
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments.
    Georgakopoulos-Soares I; Jain N; Gray JM; Hemberg M
    Bioinformatics; 2017 Jan; 33(1):137-138. PubMed ID: 27605100
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions.
    Ernst J; Melnikov A; Zhang X; Wang L; Rogov P; Mikkelsen TS; Kellis M
    Nat Biotechnol; 2016 Nov; 34(11):1180-1190. PubMed ID: 27701403
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Decoding biology with massively parallel reporter assays and machine learning.
    La Fleur A; Shi Y; Seelig G
    Genes Dev; 2024 Oct; 38(17-20):843-865. PubMed ID: 39362779
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Design tools for MPRA experiments.
    Ghazi AR; Chen ES; Henke DM; Madan N; Edelstein LC; Shaw CA
    Bioinformatics; 2018 Aug; 34(15):2682-2683. PubMed ID: 30052913
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.