444 related articles for article (PubMed ID: 31479276)
1. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database.
Dai Y; Buxton KE; Schaffer LV; Miller RM; Millikin RJ; Scalf M; Frey BL; Shortreed MR; Smith LM
J Proteome Res; 2019 Oct; 18(10):3671-3680. PubMed ID: 31479276
[TBL] [Abstract][Full Text] [Related]
2. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.
Schaffer LV; Millikin RJ; Shortreed MR; Scalf M; Smith LM
J Proteome Res; 2020 Aug; 19(8):3510-3517. PubMed ID: 32584579
[TBL] [Abstract][Full Text] [Related]
3. Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families.
Schaffer LV; Shortreed MR; Cesnik AJ; Frey BL; Solntsev SK; Scalf M; Smith LM
Anal Chem; 2018 Jan; 90(2):1325-1333. PubMed ID: 29227670
[TBL] [Abstract][Full Text] [Related]
4. Proteoform Analysis and Construction of Proteoform Families in Proteoform Suite.
Schaffer LV; Shortreed MR; Smith LM
Methods Mol Biol; 2022; 2500():67-81. PubMed ID: 35657588
[TBL] [Abstract][Full Text] [Related]
5. Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database.
Dai Y; Shortreed MR; Scalf M; Frey BL; Cesnik AJ; Solntsev S; Schaffer LV; Smith LM
J Proteome Res; 2017 Nov; 16(11):4156-4165. PubMed ID: 28968100
[TBL] [Abstract][Full Text] [Related]
6. Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy.
Schaffer LV; Rensvold JW; Shortreed MR; Cesnik AJ; Jochem A; Scalf M; Frey BL; Pagliarini DJ; Smith LM
J Proteome Res; 2018 Oct; 17(10):3526-3536. PubMed ID: 30180576
[TBL] [Abstract][Full Text] [Related]
7. Elucidating Proteoform Families from Proteoform Intact-Mass and Lysine-Count Measurements.
Shortreed MR; Frey BL; Scalf M; Knoener RA; Cesnik AJ; Smith LM
J Proteome Res; 2016 Apr; 15(4):1213-21. PubMed ID: 26941048
[TBL] [Abstract][Full Text] [Related]
8. Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data.
Schaffer LV; Anderson LC; Butcher DS; Shortreed MR; Miller RM; Pavelec C; Smith LM
J Proteome Res; 2021 Jan; 20(1):317-325. PubMed ID: 33074679
[TBL] [Abstract][Full Text] [Related]
9. Intact-Mass Analysis Facilitating the Identification of Large Human Heart Proteoforms.
Schaffer LV; Tucholski T; Shortreed MR; Ge Y; Smith LM
Anal Chem; 2019 Sep; 91(17):10937-10942. PubMed ID: 31393705
[TBL] [Abstract][Full Text] [Related]
10. Cysteine Counting via Isotopic Chemical Labeling for Intact Mass Proteoform Identifications in Tissue.
Pavek JG; Frey BL; Frost DC; Gu TJ; Li L; Smith LM
Anal Chem; 2023 Oct; 95(41):15245-15253. PubMed ID: 37791746
[TBL] [Abstract][Full Text] [Related]
11. Characterization of Proteoforms with Unknown Post-translational Modifications Using the MIScore.
Kou Q; Zhu B; Wu S; Ansong C; Tolić N; Paša-Tolić L; Liu X
J Proteome Res; 2016 Aug; 15(8):2422-32. PubMed ID: 27291504
[TBL] [Abstract][Full Text] [Related]
12. Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families.
Cesnik AJ; Shortreed MR; Schaffer LV; Knoener RA; Frey BL; Scalf M; Solntsev SK; Dai Y; Gasch AP; Smith LM
J Proteome Res; 2018 Jan; 17(1):568-578. PubMed ID: 29195273
[TBL] [Abstract][Full Text] [Related]
13. Spectral averaging with outlier rejection algorithms to increase identifications in top-down proteomics.
Carr AV; Bollis NE; Pavek JG; Shortreed MR; Smith LM
Proteomics; 2024 Apr; 24(8):e2300234. PubMed ID: 38487981
[TBL] [Abstract][Full Text] [Related]
14. Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top-Down Mass Spectrometry.
Kou Q; Wu S; Liu X
Proteomics; 2018 Feb; 18(3-4):. PubMed ID: 29327814
[TBL] [Abstract][Full Text] [Related]
15. A Markov Chain Monte Carlo Method for Estimating the Statistical Significance of Proteoform Identifications by Top-Down Mass Spectrometry.
Kou Q; Wang Z; Lubeckyj RA; Wu S; Sun L; Liu X
J Proteome Res; 2019 Mar; 18(3):878-889. PubMed ID: 30638379
[TBL] [Abstract][Full Text] [Related]
16. A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.
Kou Q; Wu S; Tolic N; Paša-Tolic L; Liu Y; Liu X
Bioinformatics; 2017 May; 33(9):1309-1316. PubMed ID: 28453668
[TBL] [Abstract][Full Text] [Related]
17. Identification and Quantification of Proteoforms by Mass Spectrometry.
Schaffer LV; Millikin RJ; Miller RM; Anderson LC; Fellers RT; Ge Y; Kelleher NL; LeDuc RD; Liu X; Payne SH; Sun L; Thomas PM; Tucholski T; Wang Z; Wu S; Wu Z; Yu D; Shortreed MR; Smith LM
Proteomics; 2019 May; 19(10):e1800361. PubMed ID: 31050378
[TBL] [Abstract][Full Text] [Related]
18. Advancing Top-down Analysis of the Human Proteome Using a Benchtop Quadrupole-Orbitrap Mass Spectrometer.
Fornelli L; Durbin KR; Fellers RT; Early BP; Greer JB; LeDuc RD; Compton PD; Kelleher NL
J Proteome Res; 2017 Feb; 16(2):609-618. PubMed ID: 28152595
[TBL] [Abstract][Full Text] [Related]
19. Automated Assignment of Proteoform Classification Levels.
Rolfs Z; Smith LM
J Proteome Res; 2021 Aug; 20(8):4101-4105. PubMed ID: 34181432
[TBL] [Abstract][Full Text] [Related]
20. Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry.
Wu S; Brown JN; Tolić N; Meng D; Liu X; Zhang H; Zhao R; Moore RJ; Pevzner P; Smith RD; Paša-Tolić L
Proteomics; 2014 May; 14(10):1211-22. PubMed ID: 24591407
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
