375 related articles for article (PubMed ID: 31495995)
1. Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation.
Ford AS; Weitzner BD; Bahl CD
Protein Sci; 2020 Jan; 29(1):43-51. PubMed ID: 31495995
[TBL] [Abstract][Full Text] [Related]
2. The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite.
Adolf-Bryfogle J; Dunbrack RL
PLoS One; 2013; 8(7):e66856. PubMed ID: 23874400
[TBL] [Abstract][Full Text] [Related]
3. Real-time PyMOL visualization for Rosetta and PyRosetta.
Baugh EH; Lyskov S; Weitzner BD; Gray JJ
PLoS One; 2011; 6(8):e21931. PubMed ID: 21857909
[TBL] [Abstract][Full Text] [Related]
4. APRICOT: Advanced Platform for Reproducible Infrastructures in the Cloud via Open Tools.
Giménez-Alventosa V; Segrelles JD; Moltó G; Roca-Sogorb M
Methods Inf Med; 2020 Dec; 59(S 02):e33-e45. PubMed ID: 32777825
[TBL] [Abstract][Full Text] [Related]
5. Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud.
Afgan E; Sloggett C; Goonasekera N; Makunin I; Benson D; Crowe M; Gladman S; Kowsar Y; Pheasant M; Horst R; Lonie A
PLoS One; 2015; 10(10):e0140829. PubMed ID: 26501966
[TBL] [Abstract][Full Text] [Related]
6. PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta.
Chaudhury S; Lyskov S; Gray JJ
Bioinformatics; 2010 Mar; 26(5):689-91. PubMed ID: 20061306
[TBL] [Abstract][Full Text] [Related]
7. Google-Accelerated Biomolecular Simulations.
Kohlhoff KJ
Methods Mol Biol; 2019; 2022():291-309. PubMed ID: 31396908
[TBL] [Abstract][Full Text] [Related]
8. Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).
Lyskov S; Chou FC; Conchúir SÓ; Der BS; Drew K; Kuroda D; Xu J; Weitzner BD; Renfrew PD; Sripakdeevong P; Borgo B; Havranek JJ; Kuhlman B; Kortemme T; Bonneau R; Gray JJ; Das R
PLoS One; 2013; 8(5):e63906. PubMed ID: 23717507
[TBL] [Abstract][Full Text] [Related]
9. mGrid: a load-balanced distributed computing environment for the remote execution of the user-defined Matlab code.
Karpievitch YV; Almeida JS
BMC Bioinformatics; 2006 Mar; 7():139. PubMed ID: 16539707
[TBL] [Abstract][Full Text] [Related]
10. Edge, Fog, and Cloud Against Disease: The Potential of High-Performance Cloud Computing for Pharma Drug Discovery.
Bonde B
Methods Mol Biol; 2024; 2716():181-202. PubMed ID: 37702940
[TBL] [Abstract][Full Text] [Related]
11. Better together: Elements of successful scientific software development in a distributed collaborative community.
Koehler Leman J; Weitzner BD; Renfrew PD; Lewis SM; Moretti R; Watkins AM; Mulligan VK; Lyskov S; Adolf-Bryfogle J; Labonte JW; Krys J; ; Bystroff C; Schief W; Gront D; Schueler-Furman O; Baker D; Bradley P; Dunbrack R; Kortemme T; Leaver-Fay A; Strauss CEM; Meiler J; Kuhlman B; Gray JJ; Bonneau R
PLoS Comput Biol; 2020 May; 16(5):e1007507. PubMed ID: 32365137
[TBL] [Abstract][Full Text] [Related]
12. InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.
Schenkelberg CD; Bystroff C
Bioinformatics; 2015 Dec; 31(24):4023-5. PubMed ID: 26315900
[TBL] [Abstract][Full Text] [Related]
13. Laniakea: an open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures.
Tangaro MA; Donvito G; Antonacci M; Chiara M; Mandreoli P; Pesole G; Zambelli F
Gigascience; 2020 Apr; 9(4):. PubMed ID: 32252069
[TBL] [Abstract][Full Text] [Related]
14. MOLNs: A CLOUD PLATFORM FOR INTERACTIVE, REPRODUCIBLE, AND SCALABLE SPATIAL STOCHASTIC COMPUTATIONAL EXPERIMENTS IN SYSTEMS BIOLOGY USING PyURDME.
Drawert B; Trogdon M; Toor S; Petzold L; Hellander A
SIAM J Sci Comput; 2016; 38(3):C179-C202. PubMed ID: 28190948
[TBL] [Abstract][Full Text] [Related]
15. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.
Christley S; Scarborough W; Salinas E; Rounds WH; Toby IT; Fonner JM; Levin MK; Kim M; Mock SA; Jordan C; Ostmeyer J; Buntzman A; Rubelt F; Davila ML; Monson NL; Scheuermann RH; Cowell LG
Front Immunol; 2018; 9():976. PubMed ID: 29867956
[TBL] [Abstract][Full Text] [Related]
16. Practically useful: what the Rosetta protein modeling suite can do for you.
Kaufmann KW; Lemmon GH; Deluca SL; Sheehan JH; Meiler J
Biochemistry; 2010 Apr; 49(14):2987-98. PubMed ID: 20235548
[TBL] [Abstract][Full Text] [Related]
17. A Framework to Simplify Combined Sampling Strategies in Rosetta.
Porter JR; Weitzner BD; Lange OF
PLoS One; 2015; 10(9):e0138220. PubMed ID: 26381271
[TBL] [Abstract][Full Text] [Related]
18. cryoem-cloud-tools: A software platform to deploy and manage cryo-EM jobs in the cloud.
Cianfrocco MA; Lahiri I; DiMaio F; Leschziner AE
J Struct Biol; 2018 Sep; 203(3):230-235. PubMed ID: 29864529
[TBL] [Abstract][Full Text] [Related]
19. Automating NEURON Simulation Deployment in Cloud Resources.
Stockton DB; Santamaria F
Neuroinformatics; 2017 Jan; 15(1):51-70. PubMed ID: 27655341
[TBL] [Abstract][Full Text] [Related]
20. MCX Cloud-a modern, scalable, high-performance and in-browser Monte Carlo simulation platform with cloud computing.
Fang Q; Yan S
J Biomed Opt; 2022 Jan; 27(8):. PubMed ID: 34989198
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]