186 related articles for article (PubMed ID: 31498807)
1. gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output.
Kammonen JI; Smolander OP; Paulin L; Pereira PAB; Laine P; Koskinen P; Jernvall J; Auvinen P
PLoS One; 2019; 14(9):e0216885. PubMed ID: 31498807
[TBL] [Abstract][Full Text] [Related]
2. Scaffolding pre-assembled contigs using SSPACE.
Boetzer M; Henkel CV; Jansen HJ; Butler D; Pirovano W
Bioinformatics; 2011 Feb; 27(4):578-9. PubMed ID: 21149342
[TBL] [Abstract][Full Text] [Related]
3. Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.
Lin HH; Liao YC
PLoS One; 2015; 10(12):e0144305. PubMed ID: 26641475
[TBL] [Abstract][Full Text] [Related]
4. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
Chu C; Li X; Wu Y
BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
[TBL] [Abstract][Full Text] [Related]
5. LRScaf: improving draft genomes using long noisy reads.
Qin M; Wu S; Li A; Zhao F; Feng H; Ding L; Ruan J
BMC Genomics; 2019 Dec; 20(1):955. PubMed ID: 31818249
[TBL] [Abstract][Full Text] [Related]
6. SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.
Boetzer M; Pirovano W
BMC Bioinformatics; 2014 Jun; 15():211. PubMed ID: 24950923
[TBL] [Abstract][Full Text] [Related]
7. RFfiller: a robust and fast statistical algorithm for gap filling in draft genomes.
Midekso FD; Yi G
PeerJ; 2022; 10():e14186. PubMed ID: 36262414
[TBL] [Abstract][Full Text] [Related]
8. LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly.
Xu GC; Xu TJ; Zhu R; Zhang Y; Li SQ; Wang HW; Li JT
Gigascience; 2019 Jan; 8(1):. PubMed ID: 30576505
[TBL] [Abstract][Full Text] [Related]
9. FGAP: an automated gap closing tool.
Piro VC; Faoro H; Weiss VA; Steffens MB; Pedrosa FO; Souza EM; Raittz RT
BMC Res Notes; 2014 Jun; 7():371. PubMed ID: 24938749
[TBL] [Abstract][Full Text] [Related]
10. Multi-CAR: a tool of contig scaffolding using multiple references.
Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
[TBL] [Abstract][Full Text] [Related]
11. SCARPA: scaffolding reads with practical algorithms.
Donmez N; Brudno M
Bioinformatics; 2013 Feb; 29(4):428-34. PubMed ID: 23274213
[TBL] [Abstract][Full Text] [Related]
12. Hierarchical scaffolding with Bambus.
Pop M; Kosack DS; Salzberg SL
Genome Res; 2004 Jan; 14(1):149-59. PubMed ID: 14707177
[TBL] [Abstract][Full Text] [Related]
13. GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.
Kosugi S; Hirakawa H; Tabata S
Bioinformatics; 2015 Dec; 31(23):3733-41. PubMed ID: 26261222
[TBL] [Abstract][Full Text] [Related]
14. ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads.
Coombe L; Warren RL; Wong J; Nikolic V; Birol I
Curr Protoc; 2023 Apr; 3(4):e733. PubMed ID: 37039735
[TBL] [Abstract][Full Text] [Related]
15. Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data.
Soorni A; Haak D; Zaitlin D; Bombarely A
BMC Genomics; 2017 Jan; 18(1):49. PubMed ID: 28061749
[TBL] [Abstract][Full Text] [Related]
16. Gap Filling as Exact Path Length Problem.
Salmela L; Sahlin K; Mäkinen V; Tomescu AI
J Comput Biol; 2016 May; 23(5):347-61. PubMed ID: 26959081
[TBL] [Abstract][Full Text] [Related]
17. Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.
English AC; Richards S; Han Y; Wang M; Vee V; Qu J; Qin X; Muzny DM; Reid JG; Worley KC; Gibbs RA
PLoS One; 2012; 7(11):e47768. PubMed ID: 23185243
[TBL] [Abstract][Full Text] [Related]
18. CSAR: a contig scaffolding tool using algebraic rearrangements.
Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
[TBL] [Abstract][Full Text] [Related]
19. MeDuSa: a multi-draft based scaffolder.
Bosi E; Donati B; Galardini M; Brunetti S; Sagot MF; Lió P; Crescenzi P; Fani R; Fondi M
Bioinformatics; 2015 Aug; 31(15):2443-51. PubMed ID: 25810435
[TBL] [Abstract][Full Text] [Related]
20. CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes.
Kuhl H; Li L; Wuertz S; Stöck M; Liang XF; Klopp C
Gigascience; 2020 May; 9(5):. PubMed ID: 32449778
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]