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6. Molecular Profiling of RNA Tumors Using High-Throughput RNA Sequencing: Overview of Library Preparation Methods. Courtney SM; da Silveira WA; Hazard ES; Hardiman G Methods Mol Biol; 2019; 1908():169-184. PubMed ID: 30649728 [TBL] [Abstract][Full Text] [Related]
7. RNA-seq RNAaccess identified as the preferred method for gene expression analysis of low quality FFPE samples. Song K; Elboudwarej E; Zhao X; Zhuo L; Pan D; Liu J; Brachmann C; Patterson SD; Yoon OK; Zavodovskaya M PLoS One; 2023; 18(10):e0293400. PubMed ID: 37883360 [TBL] [Abstract][Full Text] [Related]
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9. Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics. Liu Y; Bhagwate A; Winham SJ; Stephens MT; Harker BW; McDonough SJ; Stallings-Mann ML; Heinzen EP; Vierkant RA; Hoskin TL; Frost MH; Carter JM; Pfrender ME; Littlepage L; Radisky DC; Cunningham JM; Degnim AC; Wang C BMC Med Genomics; 2022 Sep; 15(1):195. PubMed ID: 36114500 [TBL] [Abstract][Full Text] [Related]
12. Robust transcriptional tumor signatures applicable to both formalin-fixed paraffin-embedded and fresh-frozen samples. Chen R; Guan Q; Cheng J; He J; Liu H; Cai H; Hong G; Zhang J; Li N; Ao L; Guo Z Oncotarget; 2017 Jan; 8(4):6652-6662. PubMed ID: 28036264 [TBL] [Abstract][Full Text] [Related]
13. A Workflow Guide to RNA-seq Analysis of Chaperone Function and Beyond. Lang BJ; Holton KM; Gong J; Calderwood SK Methods Mol Biol; 2018; 1709():233-252. PubMed ID: 29177664 [TBL] [Abstract][Full Text] [Related]
14. Comparison of Two Illumina Whole Transcriptome RNA Sequencing Library Preparation Methods Using Human Cancer FFPE Specimens. Wang D; Rolfe PA; Foernzler D; O'Rourke D; Zhao S; Scheuenpflug J; Feng Z Technol Cancer Res Treat; 2022; 21():15330338221076304. PubMed ID: 35138205 [No Abstract] [Full Text] [Related]
15. Optimization for Sequencing and Analysis of Degraded FFPE-RNA Samples. Levin Y; Talsania K; Tran B; Shetty J; Zhao Y; Mehta M J Vis Exp; 2020 Jun; (160):. PubMed ID: 32568231 [TBL] [Abstract][Full Text] [Related]
16. A Comparison of RNA-Seq Results from Paired Formalin-Fixed Paraffin-Embedded and Fresh-Frozen Glioblastoma Tissue Samples. Esteve-Codina A; Arpi O; Martinez-García M; Pineda E; Mallo M; Gut M; Carrato C; Rovira A; Lopez R; Tortosa A; Dabad M; Del Barco S; Heath S; Bagué S; Ribalta T; Alameda F; de la Iglesia N; Balaña C; PLoS One; 2017; 12(1):e0170632. PubMed ID: 28122052 [TBL] [Abstract][Full Text] [Related]
17. Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis. Vukmirovic M; Herazo-Maya JD; Blackmon J; Skodric-Trifunovic V; Jovanovic D; Pavlovic S; Stojsic J; Zeljkovic V; Yan X; Homer R; Stefanovic B; Kaminski N BMC Pulm Med; 2017 Jan; 17(1):15. PubMed ID: 28081703 [TBL] [Abstract][Full Text] [Related]
18. Chromatin immunoprecipitation from fixed clinical tissues reveals tumor-specific enhancer profiles. Cejas P; Li L; O'Neill NK; Duarte M; Rao P; Bowden M; Zhou CW; Mendiola M; Burgos E; Feliu J; Moreno-Rubio J; Guadalajara H; Moreno V; García-Olmo D; Bellmunt J; Mullane S; Hirsch M; Sweeney CJ; Richardson A; Liu XS; Brown M; Shivdasani RA; Long HW Nat Med; 2016 Jun; 22(6):685-91. PubMed ID: 27111282 [TBL] [Abstract][Full Text] [Related]
20. RNA-Seq as a Tool to Study the Tumor Microenvironment. Panichnantakul P; Bourgey M; Montpetit A; Bourque G; Riazalhosseini Y Methods Mol Biol; 2016; 1458():311-37. PubMed ID: 27581031 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]