BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

260 related articles for article (PubMed ID: 31503413)

  • 1. STARR-seq and UMI-STARR-seq: Assessing Enhancer Activities for Genome-Wide-, High-, and Low-Complexity Candidate Libraries.
    Neumayr C; Pagani M; Stark A; Arnold CD
    Curr Protoc Mol Biol; 2019 Sep; 128(1):e105. PubMed ID: 31503413
    [TBL] [Abstract][Full Text] [Related]  

  • 2. STARR-seq - principles and applications.
    Muerdter F; Boryń ŁM; Arnold CD
    Genomics; 2015 Sep; 106(3):145-150. PubMed ID: 26072434
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Functional assessment of human enhancer activities using whole-genome STARR-sequencing.
    Liu Y; Yu S; Dhiman VK; Brunetti T; Eckart H; White KP
    Genome Biol; 2017 Nov; 18(1):219. PubMed ID: 29151363
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genome-wide quantitative enhancer activity maps identified by STARR-seq.
    Arnold CD; Gerlach D; Stelzer C; Boryń ŁM; Rath M; Stark A
    Science; 2013 Mar; 339(6123):1074-7. PubMed ID: 23328393
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comprehensive Genomic Discovery of Non-Coding Transcriptional Enhancers in the African Malaria Vector
    Holm I; Nardini L; Pain A; Bischoff E; Anderson CE; Zongo S; Guelbeogo WM; Sagnon N; Gohl DM; Nowling RJ; Vernick KD; Riehle MM
    Front Genet; 2021; 12():785934. PubMed ID: 35082832
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Prediction accuracy of regulatory elements from sequence varies by functional sequencing technique.
    Nowling RJ; Njoya K; Peters JG; Riehle MM
    Front Cell Infect Microbiol; 2023; 13():1182567. PubMed ID: 37600946
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational Analysis of Maize Enhancer Regulatory Elements Using ATAC-STARR-seq.
    Marand AP
    bioRxiv; 2023 Jan; ():. PubMed ID: 36711646
    [TBL] [Abstract][Full Text] [Related]  

  • 8. STARRPeaker: uniform processing and accurate identification of STARR-seq active regions.
    Lee D; Shi M; Moran J; Wall M; Zhang J; Liu J; Fitzgerald D; Kyono Y; Ma L; White KP; Gerstein M
    Genome Biol; 2020 Dec; 21(1):298. PubMed ID: 33292397
    [TBL] [Abstract][Full Text] [Related]  

  • 9. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells.
    Peng T; Zhai Y; Atlasi Y; Ter Huurne M; Marks H; Stunnenberg HG; Megchelenbrink W
    Genome Biol; 2020 Sep; 21(1):243. PubMed ID: 32912294
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Resolving systematic errors in widely used enhancer activity assays in human cells.
    Muerdter F; Boryń ŁM; Woodfin AR; Neumayr C; Rath M; Zabidi MA; Pagani M; Haberle V; Kazmar T; Catarino RR; Schernhuber K; Arnold CD; Stark A
    Nat Methods; 2018 Feb; 15(2):141-149. PubMed ID: 29256496
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Cis-regulatory atlas of primary human CD4+ T cells.
    Stefan K; Barski A
    BMC Genomics; 2023 May; 24(1):253. PubMed ID: 37170195
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An unbiased AAV-STARR-seq screen revealing the enhancer activity map of genomic regions in the mouse brain in vivo.
    Chan YC; Kienle E; Oti M; Di Liddo A; Mendez-Lago M; Aschauer DF; Peter M; Pagani M; Arnold C; Vonderheit A; Schön C; Kreuz S; Stark A; Rumpel S
    Sci Rep; 2023 Apr; 13(1):6745. PubMed ID: 37185990
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Global Quantitative Mapping of Enhancers in Rice by STARR-seq.
    Sun J; He N; Niu L; Huang Y; Shen W; Zhang Y; Li L; Hou C
    Genomics Proteomics Bioinformatics; 2019 Apr; 17(2):140-153. PubMed ID: 31201999
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ATAC-STARR-seq reveals transcription factor-bound activators and silencers across the chromatin accessible human genome.
    Hansen TJ; Hodges E
    Genome Res; 2022 Jul; 32(8):1529-41. PubMed ID: 35858748
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome-wide enhancer identification by massively parallel reporter assay in Arabidopsis.
    Tan Y; Yan X; Sun J; Wan J; Li X; Huang Y; Li L; Niu L; Hou C
    Plant J; 2023 Oct; 116(1):234-250. PubMed ID: 37387536
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Development of a high efficient promoter finding method based on transient transfection.
    Lu Y; Li Q; Zheng K; Fu C; Jiang C; Zhou D; Xia C; Ma S
    Gene X; 2019 Jun; 2():100008. PubMed ID: 32550544
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genome-wide prediction of activating regulatory elements in rice by combining STARR-seq with FACS.
    Tian W; Huang X; Ouyang X
    Plant Biotechnol J; 2022 Dec; 20(12):2284-2297. PubMed ID: 36028476
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Recent advances in functional assays of transcriptional enhancers.
    Babbitt CC; Markstein M; Gray JM
    Genomics; 2015 Sep; 106(3):137-139. PubMed ID: 26100358
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Functional genomic assays to annotate enhancer-promoter interactions genome wide.
    Leung AK; Yao L; Yu H
    Hum Mol Genet; 2022 Oct; 31(R1):R97-R104. PubMed ID: 36018818
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells.
    Barakat TS; Halbritter F; Zhang M; Rendeiro AF; Perenthaler E; Bock C; Chambers I
    Cell Stem Cell; 2018 Aug; 23(2):276-288.e8. PubMed ID: 30033119
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.