These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 31504187)

  • 1. SimkaMin: fast and resource frugal de novo comparative metagenomics.
    Benoit G; Mariadassou M; Robin S; Schbath S; Peterlongo P; Lemaitre C
    Bioinformatics; 2020 Feb; 36(4):1275-1276. PubMed ID: 31504187
    [TBL] [Abstract][Full Text] [Related]  

  • 2. OGRE: Overlap Graph-based metagenomic Read clustEring.
    Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
    Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Metaviral SPAdes: assembly of viruses from metagenomic data.
    Antipov D; Raiko M; Lapidus A; Pevzner PA
    Bioinformatics; 2020 Aug; 36(14):4126-4129. PubMed ID: 32413137
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GraphBin: refined binning of metagenomic contigs using assembly graphs.
    Mallawaarachchi V; Wickramarachchi A; Lin Y
    Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Large-scale machine learning for metagenomics sequence classification.
    Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
    Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MetaBCC-LR: metagenomics binning by coverage and composition for long reads.
    Wickramarachchi A; Mallawaarachchi V; Rajan V; Lin Y
    Bioinformatics; 2020 Jul; 36(Suppl_1):i3-i11. PubMed ID: 32657364
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Simulating Illumina metagenomic data with InSilicoSeq.
    Gourlé H; Karlsson-Lindsjö O; Hayer J; Bongcam-Rudloff E
    Bioinformatics; 2019 Feb; 35(3):521-522. PubMed ID: 30016412
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MetaCache: context-aware classification of metagenomic reads using minhashing.
    Müller A; Hundt C; Hildebrandt A; Hankeln T; Schmidt B
    Bioinformatics; 2017 Dec; 33(23):3740-3748. PubMed ID: 28961782
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Faucet: streaming de novo assembly graph construction.
    Rozov R; Goldshlager G; Halperin E; Shamir R
    Bioinformatics; 2018 Jan; 34(1):147-154. PubMed ID: 29036597
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Metagenome SNP calling via read-colored de Bruijn graphs.
    Alipanahi B; Muggli MD; Jundi M; Noyes NR; Boucher C
    Bioinformatics; 2021 Apr; 36(22-23):5275-5281. PubMed ID: 32049324
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN).
    Van Damme R; Hölzer M; Viehweger A; Müller B; Bongcam-Rudloff E; Brandt C
    PLoS Comput Biol; 2021 Feb; 17(2):e1008716. PubMed ID: 33561126
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CMash: fast, multi-resolution estimation of k-mer-based Jaccard and containment indices.
    Liu S; Koslicki D
    Bioinformatics; 2022 Jun; 38(Suppl 1):i28-i35. PubMed ID: 35758788
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MeCorS: Metagenome-enabled error correction of single cell sequencing reads.
    Bremges A; Singer E; Woyke T; Sczyrba A
    Bioinformatics; 2016 Jul; 32(14):2199-201. PubMed ID: 27153586
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ganon: precise metagenomics classification against large and up-to-date sets of reference sequences.
    Piro VC; Dadi TH; Seiler E; Reinert K; Renard BY
    Bioinformatics; 2020 Jul; 36(Suppl_1):i12-i20. PubMed ID: 32657362
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
    Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
    Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Large scale microbiome profiling in the cloud.
    Valdes C; Stebliankin V; Narasimhan G
    Bioinformatics; 2019 Jul; 35(14):i13-i22. PubMed ID: 31510682
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Fast Approximation of Frequent
    Pellegrina L; Pizzi C; Vandin F
    J Comput Biol; 2020 Apr; 27(4):534-549. PubMed ID: 31891535
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data.
    Ulyantsev VI; Kazakov SV; Dubinkina VB; Tyakht AV; Alexeev DG
    Bioinformatics; 2016 Sep; 32(18):2760-7. PubMed ID: 27259541
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CoCoNet: an efficient deep learning tool for viral metagenome binning.
    Arisdakessian CG; Nigro OD; Steward GF; Poisson G; Belcaid M
    Bioinformatics; 2021 Sep; 37(18):2803-2810. PubMed ID: 33822891
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MSC: a metagenomic sequence classification algorithm.
    Saha S; Johnson J; Pal S; Weinstock GM; Rajasekaran S
    Bioinformatics; 2019 Sep; 35(17):2932-2940. PubMed ID: 30649204
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.