201 related articles for article (PubMed ID: 31504977)
1. Quartet-Based Computations of Internode Certainty Provide Robust Measures of Phylogenetic Incongruence.
Zhou X; Lutteropp S; Czech L; Stamatakis A; Looz MV; Rokas A
Syst Biol; 2020 Mar; 69(2):308-324. PubMed ID: 31504977
[TBL] [Abstract][Full Text] [Related]
2. Novel information theory-based measures for quantifying incongruence among phylogenetic trees.
Salichos L; Stamatakis A; Rokas A
Mol Biol Evol; 2014 May; 31(5):1261-71. PubMed ID: 24509691
[TBL] [Abstract][Full Text] [Related]
3. Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data.
Shen XX; Steenwyk JL; Rokas A
Syst Biol; 2021 Aug; 70(5):997-1014. PubMed ID: 33616672
[TBL] [Abstract][Full Text] [Related]
4. Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae; genus Hylarana).
Chan KO; Hutter CR; Wood PL; Grismer LL; Brown RM
Mol Phylogenet Evol; 2020 Oct; 151():106899. PubMed ID: 32590046
[TBL] [Abstract][Full Text] [Related]
5. A Genome-Scale Investigation of Incongruence in Culicidae Mosquitoes.
Wang Y; Zhou X; Yang D; Rokas A
Genome Biol Evol; 2015 Nov; 7(12):3463-71. PubMed ID: 26608059
[TBL] [Abstract][Full Text] [Related]
6. Computing the Internode Certainty and Related Measures from Partial Gene Trees.
Kobert K; Salichos L; Rokas A; Stamatakis A
Mol Biol Evol; 2016 Jun; 33(6):1606-17. PubMed ID: 26915959
[TBL] [Abstract][Full Text] [Related]
7. More on the Best Evolutionary Rate for Phylogenetic Analysis.
Klopfstein S; Massingham T; Goldman N
Syst Biol; 2017 Sep; 66(5):769-785. PubMed ID: 28595363
[TBL] [Abstract][Full Text] [Related]
8. Four myriapod relatives - but who are sisters? No end to debates on relationships among the four major myriapod subgroups.
Szucsich NU; Bartel D; Blanke A; Böhm A; Donath A; Fukui M; Grove S; Liu S; Macek O; Machida R; Misof B; Nakagaki Y; Podsiadlowski L; Sekiya K; Tomizuka S; Von Reumont BM; Waterhouse RM; Walzl M; Meng G; Zhou X; Pass G; Meusemann K
BMC Evol Biol; 2020 Nov; 20(1):144. PubMed ID: 33148176
[TBL] [Abstract][Full Text] [Related]
9. The gene tree delusion.
Springer MS; Gatesy J
Mol Phylogenet Evol; 2016 Jan; 94(Pt A):1-33. PubMed ID: 26238460
[TBL] [Abstract][Full Text] [Related]
10. Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data.
Mahbub S; Sawmya S; Saha A; Reaz R; Rahman MS; Bayzid MS
J Comput Biol; 2022 Nov; 29(11):1156-1172. PubMed ID: 36048555
[TBL] [Abstract][Full Text] [Related]
11. Selecting Question-Specific Genes to Reduce Incongruence in Phylogenomics: A Case Study of Jawed Vertebrate Backbone Phylogeny.
Chen MY; Liang D; Zhang P
Syst Biol; 2015 Nov; 64(6):1104-20. PubMed ID: 26276158
[TBL] [Abstract][Full Text] [Related]
12. What is the danger of the anomaly zone for empirical phylogenetics?
Huang H; Knowles LL
Syst Biol; 2009 Oct; 58(5):527-36. PubMed ID: 20525606
[TBL] [Abstract][Full Text] [Related]
13. Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life.
Pease JB; Brown JW; Walker JF; Hinchliff CE; Smith SA
Am J Bot; 2018 Mar; 105(3):385-403. PubMed ID: 29746719
[TBL] [Abstract][Full Text] [Related]
14. Split-specific bootstrap measures for quantifying phylogenetic stability and the influence of taxon selection.
Wang HC; Susko E; Roger AJ
Mol Phylogenet Evol; 2016 Dec; 105():114-125. PubMed ID: 27568211
[TBL] [Abstract][Full Text] [Related]
15. PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R.
Dornburg A; Fisk JN; Tamagnan J; Townsend JP
BMC Evol Biol; 2016 Dec; 16(1):262. PubMed ID: 27905871
[TBL] [Abstract][Full Text] [Related]
16. Impacts of Terraces on Phylogenetic Inference.
Sanderson MJ; McMahon MM; Stamatakis A; Zwickl DJ; Steel M
Syst Biol; 2015 Sep; 64(5):709-26. PubMed ID: 25999395
[TBL] [Abstract][Full Text] [Related]
17. Weighted quartets phylogenetics.
Avni E; Cohen R; Snir S
Syst Biol; 2015 Mar; 64(2):233-42. PubMed ID: 25414175
[TBL] [Abstract][Full Text] [Related]
18. Quartet decomposition server: a platform for analyzing phylogenetic trees.
Mao F; Williams D; Zhaxybayeva O; Poptsova M; Lapierre P; Gogarten JP; Xu Y
BMC Bioinformatics; 2012 Jun; 13():123. PubMed ID: 22676320
[TBL] [Abstract][Full Text] [Related]
19. ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees.
Zhang C; Rabiee M; Sayyari E; Mirarab S
BMC Bioinformatics; 2018 May; 19(Suppl 6):153. PubMed ID: 29745866
[TBL] [Abstract][Full Text] [Related]
20. Partitioned coalescence support reveals biases in species-tree methods and detects gene trees that determine phylogenomic conflicts.
Gatesy J; Sloan DB; Warren JM; Baker RH; Simmons MP; Springer MS
Mol Phylogenet Evol; 2019 Oct; 139():106539. PubMed ID: 31226465
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]