215 related articles for article (PubMed ID: 31509524)
1. Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.
Read DF; Cook K; Lu YY; Le Roch KG; Noble WS
PLoS Comput Biol; 2019 Sep; 15(9):e1007329. PubMed ID: 31509524
[TBL] [Abstract][Full Text] [Related]
2. Nucleosome occupancy at transcription start sites in the human malaria parasite: a hard-wired evolution of virulence?
Ponts N; Harris EY; Lonardi S; Le Roch KG
Infect Genet Evol; 2011 Jun; 11(4):716-24. PubMed ID: 20708104
[TBL] [Abstract][Full Text] [Related]
3. Analysis of nucleosome positioning landscapes enables gene discovery in the human malaria parasite Plasmodium falciparum.
Lu XM; Bunnik EM; Pokhriyal N; Nasseri S; Lonardi S; Le Roch KG
BMC Genomics; 2015 Nov; 16():1005. PubMed ID: 26607328
[TBL] [Abstract][Full Text] [Related]
4. Dynamic and Combinatorial Landscape of Histone Modifications during the Intraerythrocytic Developmental Cycle of the Malaria Parasite.
Saraf A; Cervantes S; Bunnik EM; Ponts N; Sardiu ME; Chung DW; Prudhomme J; Varberg JM; Wen Z; Washburn MP; Florens L; Le Roch KG
J Proteome Res; 2016 Aug; 15(8):2787-801. PubMed ID: 27291344
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes.
Westenberger SJ; Cui L; Dharia N; Winzeler E; Cui L
BMC Genomics; 2009 Dec; 10():610. PubMed ID: 20015349
[TBL] [Abstract][Full Text] [Related]
6. DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum.
Bunnik EM; Polishko A; Prudhomme J; Ponts N; Gill SS; Lonardi S; Le Roch KG
BMC Genomics; 2014 May; 15(1):347. PubMed ID: 24885191
[TBL] [Abstract][Full Text] [Related]
7. Nucleosome landscape and control of transcription in the human malaria parasite.
Ponts N; Harris EY; Prudhomme J; Wick I; Eckhardt-Ludka C; Hicks GR; Hardiman G; Lonardi S; Le Roch KG
Genome Res; 2010 Feb; 20(2):228-38. PubMed ID: 20054063
[TBL] [Abstract][Full Text] [Related]
8. Peculiarities of
Watzlowik MT; Das S; Meissner M; Längst G
Int J Mol Sci; 2021 May; 22(10):. PubMed ID: 34068393
[TBL] [Abstract][Full Text] [Related]
9. The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences.
Kensche PR; Hoeijmakers WA; Toenhake CG; Bras M; Chappell L; Berriman M; Bártfai R
Nucleic Acids Res; 2016 Mar; 44(5):2110-24. PubMed ID: 26578577
[TBL] [Abstract][Full Text] [Related]
10. In silico discovery of transcription regulatory elements in Plasmodium falciparum.
Young JA; Johnson JR; Benner C; Yan SF; Chen K; Le Roch KG; Zhou Y; Winzeler EA
BMC Genomics; 2008 Feb; 9():70. PubMed ID: 18257930
[TBL] [Abstract][Full Text] [Related]
11. Expression of P. falciparum var genes involves exchange of the histone variant H2A.Z at the promoter.
Petter M; Lee CC; Byrne TJ; Boysen KE; Volz J; Ralph SA; Cowman AF; Brown GV; Duffy MF
PLoS Pathog; 2011 Feb; 7(2):e1001292. PubMed ID: 21379342
[TBL] [Abstract][Full Text] [Related]
12. Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum.
Ay F; Bunnik EM; Varoquaux N; Vert JP; Noble WS; Le Roch KG
Bioessays; 2015 Feb; 37(2):182-94. PubMed ID: 25394267
[TBL] [Abstract][Full Text] [Related]
13. Deciphering histone code of transcriptional regulation in malaria parasites by large-scale data mining.
Chen H; Lonardi S; Zheng J
Comput Biol Chem; 2014 Jun; 50():3-10. PubMed ID: 24581698
[TBL] [Abstract][Full Text] [Related]
14. In silico and biological survey of transcription-associated proteins implicated in the transcriptional machinery during the erythrocytic development of Plasmodium falciparum.
Bischoff E; Vaquero C
BMC Genomics; 2010 Jan; 11():34. PubMed ID: 20078850
[TBL] [Abstract][Full Text] [Related]
15. The role of epigenetics and chromatin structure in transcriptional regulation in malaria parasites.
Abel S; Le Roch KG
Brief Funct Genomics; 2019 Sep; 18(5):302-313. PubMed ID: 31220857
[TBL] [Abstract][Full Text] [Related]
16. Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning.
Silberhorn E; Schwartz U; Löffler P; Schmitz S; Symelka A; de Koning-Ward T; Merkl R; Längst G
PLoS Pathog; 2016 Dec; 12(12):e1006080. PubMed ID: 28033404
[TBL] [Abstract][Full Text] [Related]
17. Histone modifications associated with gene expression and genome accessibility are dynamically enriched at Plasmodium falciparum regulatory sequences.
Tang J; Chisholm SA; Yeoh LM; Gilson PR; Papenfuss AT; Day KP; Petter M; Duffy MF
Epigenetics Chromatin; 2020 Nov; 13(1):50. PubMed ID: 33225957
[TBL] [Abstract][Full Text] [Related]
18. An epigenetic map of malaria parasite development from host to vector.
Witmer K; Fraschka SA; Vlachou D; Bártfai R; Christophides GK
Sci Rep; 2020 Apr; 10(1):6354. PubMed ID: 32286373
[TBL] [Abstract][Full Text] [Related]
19. Clipped histone H3 is integrated into nucleosomes of DNA replication genes in the human malaria parasite
Herrera-Solorio AM; Vembar SS; MacPherson CR; Lozano-Amado D; Meza GR; Xoconostle-Cazares B; Martins RM; Chen P; Vargas M; Scherf A; Hernández-Rivas R
EMBO Rep; 2019 Apr; 20(4):. PubMed ID: 30833341
[TBL] [Abstract][Full Text] [Related]
20. PfMyb1, a Plasmodium falciparum transcription factor, is required for intra-erythrocytic growth and controls key genes for cell cycle regulation.
Gissot M; Briquet S; Refour P; Boschet C; Vaquero C
J Mol Biol; 2005 Feb; 346(1):29-42. PubMed ID: 15663925
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
