BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 31510646)

  • 1. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
    Bansal V
    Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HapCUT2: A Method for Phasing Genomes Using Experimental Sequence Data.
    Bansal V
    Methods Mol Biol; 2023; 2590():139-147. PubMed ID: 36335497
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 4. HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies.
    Edge P; Bafna V; Bansal V
    Genome Res; 2017 May; 27(5):801-812. PubMed ID: 27940952
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparison of phasing strategies for whole human genomes.
    Choi Y; Chan AP; Kirkness E; Telenti A; Schork NJ
    PLoS Genet; 2018 Apr; 14(4):e1007308. PubMed ID: 29621242
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Haplotype phasing in single-cell DNA-sequencing data.
    Satas G; Raphael BJ
    Bioinformatics; 2018 Jul; 34(13):i211-i217. PubMed ID: 29950014
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DCHap: A Divide-and-Conquer Haplotype Phasing Algorithm for Third-Generation Sequences.
    Li Y; Lin Y
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(3):1277-1284. PubMed ID: 32750878
    [TBL] [Abstract][Full Text] [Related]  

  • 8. LongPhase: an ultra-fast chromosome-scale phasing algorithm for small and large variants.
    Lin JH; Chen LC; Yu SC; Huang YT
    Bioinformatics; 2022 Mar; 38(7):1816-1822. PubMed ID: 35104333
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dense and accurate whole-chromosome haplotyping of individual genomes.
    Porubsky D; Garg S; Sanders AD; Korbel JO; Guryev V; Lansdorp PM; Marschall T
    Nat Commun; 2017 Nov; 8(1):1293. PubMed ID: 29101320
    [TBL] [Abstract][Full Text] [Related]  

  • 10. HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data.
    Berger E; Yorukoglu D; Peng J; Berger B
    PLoS Comput Biol; 2014 Mar; 10(3):e1003502. PubMed ID: 24675685
    [TBL] [Abstract][Full Text] [Related]  

  • 11. HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences.
    Fruzangohar M; Timmins WA; Kravchuk O; Taylor J
    Gigascience; 2022 May; 11():. PubMed ID: 35579550
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Long-Read Sequencing Approach for Direct Haplotype Phasing in Clinical Settings.
    Maestri S; Maturo MG; Cosentino E; Marcolungo L; Iadarola B; Fortunati E; Rossato M; Delledonne M
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271988
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm.
    Ahn S; Vikalo H
    BMC Bioinformatics; 2015 Jul; 16():223. PubMed ID: 26178880
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
    Kronenberg ZN; Rhie A; Koren S; Concepcion GT; Peluso P; Munson KM; Porubsky D; Kuhn K; Mueller KA; Low WY; Hiendleder S; Fedrigo O; Liachko I; Hall RJ; Phillippy AM; Eichler EE; Williams JL; Smith TPL; Jarvis ED; Sullivan ST; Kingan SB
    Nat Commun; 2021 Apr; 12(1):1935. PubMed ID: 33911078
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Integrating dilution-based sequencing and population genotypes for single individual haplotyping.
    Matsumoto H; Kiryu H
    BMC Genomics; 2014 Aug; 15(1):733. PubMed ID: 25167975
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments.
    Bansal V
    Bioinformatics; 2018 Jan; 34(1):155-162. PubMed ID: 29036419
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.
    Zhang K; Zhi D
    Bioinformatics; 2013 Oct; 29(19):2427-34. PubMed ID: 23943637
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads.
    Hu Y; Yang C; Zhang L; Zhou X
    Methods Mol Biol; 2023; 2590():161-182. PubMed ID: 36335499
    [TBL] [Abstract][Full Text] [Related]  

  • 19. WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
    Patterson M; Marschall T; Pisanti N; van Iersel L; Stougie L; Klau GW; Schönhuth A
    J Comput Biol; 2015 Jun; 22(6):498-509. PubMed ID: 25658651
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
    Edge P; Bansal V
    Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.