These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 31510677)

  • 1. TideHunter: efficient and sensitive tandem repeat detection from noisy long-reads using seed-and-chain.
    Gao Y; Liu B; Wang Y; Xing Y
    Bioinformatics; 2019 Jul; 35(14):i200-i207. PubMed ID: 31510677
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data.
    Harris RS; Cechova M; Makova KD
    Bioinformatics; 2019 Nov; 35(22):4809-4811. PubMed ID: 31290946
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph.
    Morisse P; Lecroq T; Lefebvre A
    Bioinformatics; 2018 Dec; 34(24):4213-4222. PubMed ID: 29955770
    [TBL] [Abstract][Full Text] [Related]  

  • 4. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
    Haghshenas E; Sahinalp SC; Hach F
    Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Overlap detection on long, error-prone sequencing reads via smooth q-gram.
    Song Y; Tang H; Zhang H; Zhang Q
    Bioinformatics; 2020 Dec; 36(19):4838-4845. PubMed ID: 32311007
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Analysis of Tandem Repeat Expansions Using Long DNA Reads.
    Mitsuhashi S; Frith MC
    Methods Mol Biol; 2023; 2632():147-159. PubMed ID: 36781727
    [TBL] [Abstract][Full Text] [Related]  

  • 8. lamassemble: Multiple Alignment and Consensus Sequence of Long Reads.
    Frith MC; Mitsuhashi S; Katoh K
    Methods Mol Biol; 2021; 2231():135-145. PubMed ID: 33289891
    [TBL] [Abstract][Full Text] [Related]  

  • 9. LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads.
    Ziaei Jam H; Zook JM; Javadzadeh S; Park J; Sehgal A; Gymrek M
    Genome Biol; 2024 Jul; 25(1):176. PubMed ID: 38965568
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Finding long tandem repeats in long noisy reads.
    Morishita S; Ichikawa K; Myers EW
    Bioinformatics; 2021 May; 37(5):612-621. PubMed ID: 33031558
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.
    Li H
    Bioinformatics; 2016 Jul; 32(14):2103-10. PubMed ID: 27153593
    [TBL] [Abstract][Full Text] [Related]  

  • 12. LRCstats, a tool for evaluating long reads correction methods.
    La S; Haghshenas E; Chauve C
    Bioinformatics; 2017 Nov; 33(22):3652-3654. PubMed ID: 29036421
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2.
    Zee A; Deng DZQ; Adams M; Schimke KD; Corbett-Detig R; Russell SL; Zhang X; Schmitz RJ; Vollmers C
    Genome Res; 2022; 32(11-12):2092-2106. PubMed ID: 36351772
    [TBL] [Abstract][Full Text] [Related]  

  • 14. QAlign: aligning nanopore reads accurately using current-level modeling.
    Joshi D; Mao S; Kannan S; Diggavi S
    Bioinformatics; 2021 May; 37(5):625-633. PubMed ID: 33051648
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads.
    Mitsuhashi S; Frith MC; Mizuguchi T; Miyatake S; Toyota T; Adachi H; Oma Y; Kino Y; Mitsuhashi H; Matsumoto N
    Genome Biol; 2019 Mar; 20(1):58. PubMed ID: 30890163
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Hybrid de novo tandem repeat detection using short and long reads.
    Fertin G; Jean G; Radulescu A; Rusu I
    BMC Med Genomics; 2015; 8 Suppl 3(Suppl 3):S5. PubMed ID: 26399998
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HQAlign: aligning nanopore reads for SV detection using current-level modeling.
    Joshi D; Diggavi S; Chaisson MJP; Kannan S
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37738608
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.
    Recanati A; Brüls T; d'Aspremont A
    Bioinformatics; 2017 Oct; 33(20):3188-3194. PubMed ID: 28605450
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores.
    Ono Y; Asai K; Hamada M
    Bioinformatics; 2021 May; 37(5):589-595. PubMed ID: 32976553
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns.
    Mikheenko A; Prjibelski AD; Joglekar A; Tilgner HU
    Genome Res; 2022 Apr; 32(4):726-737. PubMed ID: 35301264
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.