These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
9. Exploiting parallelization in positional Burrows-Wheeler transform (PBWT) algorithms for efficient haplotype matching and compression. Wertenbroek R; Xenarios I; Thoma Y; Delaneau O Bioinform Adv; 2023; 3(1):vbad021. PubMed ID: 36908398 [TBL] [Abstract][Full Text] [Related]
10. Haplotype matching in large cohorts using the Li and Stephens model. Lunter G Bioinformatics; 2019 Mar; 35(5):798-806. PubMed ID: 30165547 [TBL] [Abstract][Full Text] [Related]
11. Efficient privacy-preserving string search and an application in genomics. Shimizu K; Nuida K; Rätsch G Bioinformatics; 2016 Jun; 32(11):1652-61. PubMed ID: 27153731 [TBL] [Abstract][Full Text] [Related]
12. Minimal positional substring cover is a haplotype threading alternative to Li and Stephens model. Sanaullah A; Zhi D; Zhang S Genome Res; 2023 Jul; 33(7):1007-1014. PubMed ID: 37316352 [TBL] [Abstract][Full Text] [Related]
14. EagleImp: fast and accurate genome-wide phasing and imputation in a single tool. Wienbrandt L; Ellinghaus D Bioinformatics; 2022 Nov; 38(22):4999-5006. PubMed ID: 36130053 [TBL] [Abstract][Full Text] [Related]
15. A graph extension of the positional Burrows-Wheeler transform and its applications. Novak AM; Garrison E; Paten B Algorithms Mol Biol; 2017; 12():18. PubMed ID: 28702075 [TBL] [Abstract][Full Text] [Related]
16. Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model. Sanaullah A; Zhi D; Zhang S bioRxiv; 2023 Jan; ():. PubMed ID: 36711469 [TBL] [Abstract][Full Text] [Related]
17. Data Structures for SMEM-Finding in the PBWT. Bonizzoni P; Boucher C; Cozzi D; Gagie T; Köppl D; Rossi M Int Symp String Process Inf Retr; 2023 Sep; 14240():89-101. PubMed ID: 39149146 [TBL] [Abstract][Full Text] [Related]
18. Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers. Liu Y; Zhang LY; Li J Bioinformatics; 2019 Nov; 35(22):4560-4567. PubMed ID: 30994891 [TBL] [Abstract][Full Text] [Related]
19. Fast inference of genetic recombination rates in biobank scale data. Naseri A; Yue W; Zhang S; Zhi D Genome Res; 2023 Jul; 33(7):1015-1022. PubMed ID: 37349109 [TBL] [Abstract][Full Text] [Related]
20. Fast and Robust Identity-by-Descent Inference with the Templated Positional Burrows-Wheeler Transform. Freyman WA; McManus KF; Shringarpure SS; Jewett EM; Bryc K; ; Auton A Mol Biol Evol; 2021 May; 38(5):2131-2151. PubMed ID: 33355662 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]