These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 31521094)

  • 21. Delineation of folding pathways of a β-sheet miniprotein.
    Zheng W; Qi B; Rohrdanz MA; Caflisch A; Dinner AR; Clementi C
    J Phys Chem B; 2011 Nov; 115(44):13065-74. PubMed ID: 21942785
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Recovery of Protein Folding Funnels from Single-Molecule Time Series by Delay Embeddings and Manifold Learning.
    Wang J; Ferguson AL
    J Phys Chem B; 2018 Dec; 122(50):11931-11952. PubMed ID: 30428261
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Gyration- and inertia-tensor-based collective coordinates for metadynamics. Application on the conformational behavior of polyalanine peptides and Trp-cage folding.
    Vymětal J; Vondrášek J
    J Phys Chem A; 2011 Oct; 115(41):11455-65. PubMed ID: 21961799
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Exploring the free energy landscape of a model β-hairpin peptide and its isoform.
    Narayanan C; Dias CL
    Proteins; 2014 Oct; 82(10):2394-402. PubMed ID: 24825659
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Transformation of a design peptide between the α-helix and β-hairpin structures using a helix-strand replica-exchange molecular dynamics simulation.
    Okumura H; Itoh SG
    Phys Chem Chem Phys; 2013 Sep; 15(33):13852-61. PubMed ID: 23839056
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A Maximum-Likelihood Approach to Force-Field Calibration.
    Zaborowski B; Jagieła D; Czaplewski C; Hałabis A; Lewandowska A; Żmudzińska W; Ołdziej S; Karczyńska A; Omieczynski C; Wirecki T; Liwo A
    J Chem Inf Model; 2015 Sep; 55(9):2050-70. PubMed ID: 26263302
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions.
    Olson MA; Feig M; Brooks CL
    J Comput Chem; 2008 Apr; 29(5):820-31. PubMed ID: 17876760
    [TBL] [Abstract][Full Text] [Related]  

  • 28. A physically meaningful method for the comparison of potential energy functions.
    Alonso JL; Echenique P
    J Comput Chem; 2006 Jan; 27(2):238-52. PubMed ID: 16331642
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Multiscale investigation of chemical interference in proteins.
    Samiotakis A; Homouz D; Cheung MS
    J Chem Phys; 2010 May; 132(17):175101. PubMed ID: 20459186
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Structural properties of hydration shell around various conformations of simple polypeptides.
    Czapiewski D; Zielkiewicz J
    J Phys Chem B; 2010 Apr; 114(13):4536-50. PubMed ID: 20232827
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Endpoint-restricted adiabatic free energy dynamics approach for the exploration of biomolecular conformational equilibria.
    Cuendet MA; Margul DT; Schneider E; Vogt-Maranto L; Tuckerman ME
    J Chem Phys; 2018 Aug; 149(7):072316. PubMed ID: 30134695
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Supramolecular Assembly of Peptide Amphiphiles.
    Hendricks MP; Sato K; Palmer LC; Stupp SI
    Acc Chem Res; 2017 Oct; 50(10):2440-2448. PubMed ID: 28876055
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Multiscale simulations of protein folding: application to formation of secondary structures.
    Xu J; Ren Y; Li J
    J Biomol Struct Dyn; 2013; 31(7):779-87. PubMed ID: 22908945
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Trp-cage: folding free energy landscape in explicit water.
    Zhou R
    Proc Natl Acad Sci U S A; 2003 Nov; 100(23):13280-5. PubMed ID: 14581616
    [TBL] [Abstract][Full Text] [Related]  

  • 35. A wavelet approach for the analysis of folding trajectory of protein Trp-cage.
    Ye L; Chen H; Liu T; Wu Z; Li J; Zhou R
    J Bioinform Comput Biol; 2005 Dec; 3(6):1351-70. PubMed ID: 16374911
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Computing committors via Mahalanobis diffusion maps with enhanced sampling data.
    Evans L; Cameron MK; Tiwary P
    J Chem Phys; 2022 Dec; 157(21):214107. PubMed ID: 36511548
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Comparison between self-guided Langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations.
    Olson MA; Chaudhury S; Lee MS
    J Comput Chem; 2011 Nov; 32(14):3014-22. PubMed ID: 21793008
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Inherent structure versus geometric metric for state space discretization.
    Liu H; Li M; Fan J; Huo S
    J Comput Chem; 2016 May; 37(14):1251-8. PubMed ID: 26915811
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Efficient traversal of beta-sheet protein folding pathways using ensemble models.
    Shenker S; O'Donnell CW; Devadas S; Berger B; Waldispühl J
    J Comput Biol; 2011 Nov; 18(11):1635-47. PubMed ID: 21958108
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Metadynamics Enhanced Markov Modeling of Protein Dynamics.
    Biswas M; Lickert B; Stock G
    J Phys Chem B; 2018 May; 122(21):5508-5514. PubMed ID: 29338243
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.