443 related articles for article (PubMed ID: 31522987)
1. Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF.
Hansen AS; Hsieh TS; Cattoglio C; Pustova I; Saldaña-Meyer R; Reinberg D; Darzacq X; Tjian R
Mol Cell; 2019 Nov; 76(3):395-411.e13. PubMed ID: 31522987
[TBL] [Abstract][Full Text] [Related]
2. RNA Interactions Are Essential for CTCF-Mediated Genome Organization.
Saldaña-Meyer R; Rodriguez-Hernaez J; Escobar T; Nishana M; Jácome-López K; Nora EP; Bruneau BG; Tsirigos A; Furlan-Magaril M; Skok J; Reinberg D
Mol Cell; 2019 Nov; 76(3):412-422.e5. PubMed ID: 31522988
[TBL] [Abstract][Full Text] [Related]
3. CTCF as a boundary factor for cohesin-mediated loop extrusion: evidence for a multi-step mechanism.
Hansen AS
Nucleus; 2020 Dec; 11(1):132-148. PubMed ID: 32631111
[TBL] [Abstract][Full Text] [Related]
4. HOTTIP-dependent R-loop formation regulates CTCF boundary activity and TAD integrity in leukemia.
Luo H; Zhu G; Eshelman MA; Fung TK; Lai Q; Wang F; Zeisig BB; Lesperance J; Ma X; Chen S; Cesari N; Cogle C; Chen B; Xu B; Yang FC; So CWE; Qiu Y; Xu M; Huang S
Mol Cell; 2022 Feb; 82(4):833-851.e11. PubMed ID: 35180428
[TBL] [Abstract][Full Text] [Related]
5. Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Wutz G; Várnai C; Nagasaka K; Cisneros DA; Stocsits RR; Tang W; Schoenfelder S; Jessberger G; Muhar M; Hossain MJ; Walther N; Koch B; Kueblbeck M; Ellenberg J; Zuber J; Fraser P; Peters JM
EMBO J; 2017 Dec; 36(24):3573-3599. PubMed ID: 29217591
[TBL] [Abstract][Full Text] [Related]
6. Molecular basis of CTCF binding polarity in genome folding.
Nora EP; Caccianini L; Fudenberg G; So K; Kameswaran V; Nagle A; Uebersohn A; Hajj B; Saux AL; Coulon A; Mirny LA; Pollard KS; Dahan M; Bruneau BG
Nat Commun; 2020 Nov; 11(1):5612. PubMed ID: 33154377
[TBL] [Abstract][Full Text] [Related]
7. Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A; Park M; Berger SE; Murphy SE; Nora EP; Boettiger AN
Mol Cell; 2023 May; 83(9):1377-1392.e6. PubMed ID: 37146570
[TBL] [Abstract][Full Text] [Related]
8. Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver.
Matthews BJ; Waxman DJ
Elife; 2018 May; 7():. PubMed ID: 29757144
[TBL] [Abstract][Full Text] [Related]
9. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
Front Immunol; 2018; 9():425. PubMed ID: 29593713
[TBL] [Abstract][Full Text] [Related]
10. CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion.
Davidson IF; Barth R; Zaczek M; van der Torre J; Tang W; Nagasaka K; Janissen R; Kerssemakers J; Wutz G; Dekker C; Peters JM
Nature; 2023 Apr; 616(7958):822-827. PubMed ID: 37076620
[TBL] [Abstract][Full Text] [Related]
11. Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression.
Vos ESM; Valdes-Quezada C; Huang Y; Allahyar A; Verstegen MJAM; Felder AK; van der Vegt F; Uijttewaal ECH; Krijger PHL; de Laat W
Mol Cell; 2021 Aug; 81(15):3082-3095.e6. PubMed ID: 34197738
[TBL] [Abstract][Full Text] [Related]
12. Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency.
Pękowska A; Klaus B; Xiang W; Severino J; Daigle N; Klein FA; Oleś M; Casellas R; Ellenberg J; Steinmetz LM; Bertone P; Huber W
Cell Syst; 2018 Nov; 7(5):482-495.e10. PubMed ID: 30414923
[TBL] [Abstract][Full Text] [Related]
13. Nucleoporin 153 links nuclear pore complex to chromatin architecture by mediating CTCF and cohesin binding.
Kadota S; Ou J; Shi Y; Lee JT; Sun J; Yildirim E
Nat Commun; 2020 May; 11(1):2606. PubMed ID: 32451376
[TBL] [Abstract][Full Text] [Related]
14. Specific Contributions of Cohesin-SA1 and Cohesin-SA2 to TADs and Polycomb Domains in Embryonic Stem Cells.
Cuadrado A; Giménez-Llorente D; Kojic A; Rodríguez-Corsino M; Cuartero Y; Martín-Serrano G; Gómez-López G; Marti-Renom MA; Losada A
Cell Rep; 2019 Jun; 27(12):3500-3510.e4. PubMed ID: 31216471
[TBL] [Abstract][Full Text] [Related]
15. CHD4 Conceals Aberrant CTCF-Binding Sites at TAD Interiors by Regulating Chromatin Accessibility in Mouse Embryonic Stem Cells.
Han S; Lee H; Lee AJ; Kim SK; Jung I; Koh GY; Kim TK; Lee D
Mol Cells; 2021 Nov; 44(11):805-829. PubMed ID: 34764232
[TBL] [Abstract][Full Text] [Related]
16. The structural basis for cohesin-CTCF-anchored loops.
Li Y; Haarhuis JHI; Sedeño Cacciatore Á; Oldenkamp R; van Ruiten MS; Willems L; Teunissen H; Muir KW; de Wit E; Rowland BD; Panne D
Nature; 2020 Feb; 578(7795):472-476. PubMed ID: 31905366
[TBL] [Abstract][Full Text] [Related]
17. CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains.
Huang H; Zhu Q; Jussila A; Han Y; Bintu B; Kern C; Conte M; Zhang Y; Bianco S; Chiariello AM; Yu M; Hu R; Tastemel M; Juric I; Hu M; Nicodemi M; Zhuang X; Ren B
Nat Genet; 2021 Jul; 53(7):1064-1074. PubMed ID: 34002095
[TBL] [Abstract][Full Text] [Related]
18. Impact of 3D genome organization, guided by cohesin and CTCF looping, on sex-biased chromatin interactions and gene expression in mouse liver.
Matthews BJ; Waxman DJ
Epigenetics Chromatin; 2020 Jul; 13(1):30. PubMed ID: 32680543
[TBL] [Abstract][Full Text] [Related]
19. Opposing Effects of Cohesin and Transcription on CTCF Organization Revealed by Super-resolution Imaging.
Gu B; Comerci CJ; McCarthy DG; Saurabh S; Moerner WE; Wysocka J
Mol Cell; 2020 Nov; 80(4):699-711.e7. PubMed ID: 33091336
[TBL] [Abstract][Full Text] [Related]
20. Recent evidence that TADs and chromatin loops are dynamic structures.
Hansen AS; Cattoglio C; Darzacq X; Tjian R
Nucleus; 2018 Jan; 9(1):20-32. PubMed ID: 29077530
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
