BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 31527408)

  • 21. Evaluation of short read metagenomic assembly.
    Charuvaka A; Rangwala H
    BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S8. PubMed ID: 21989307
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Terabase-Scale Coassembly of a Tropical Soil Microbiome.
    Riley R; Bowers RM; Camargo AP; Campbell A; Egan R; Eloe-Fadrosh EA; Foster B; Hofmeyr S; Huntemann M; Kellom M; Kimbrel JA; Oliker L; Yelick K; Pett-Ridge J; Salamov A; Varghese NJ; Clum A
    Microbiol Spectr; 2023 Aug; 11(4):e0020023. PubMed ID: 37310219
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality.
    Albanese D; Donati C
    F1000Res; 2021; 10():822. PubMed ID: 35136576
    [TBL] [Abstract][Full Text] [Related]  

  • 24. RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.
    Nalbantoglu OU; Way SF; Hinrichs SH; Sayood K
    BMC Bioinformatics; 2011 Jan; 12():41. PubMed ID: 21281493
    [TBL] [Abstract][Full Text] [Related]  

  • 25. SnakeWRAP: a Snakemake workflow to facilitate automated processing of metagenomic data through the metaWRAP pipeline.
    Krapohl J; Pickett BE
    F1000Res; 2022; 11():265. PubMed ID: 37469625
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Unsupervised Binning of Metagenomic Assembled Contigs Using Improved Fuzzy C-Means Method.
    Liu Y; Hou T; Kang B; Liu F
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1459-1467. PubMed ID: 27295684
    [TBL] [Abstract][Full Text] [Related]  

  • 27. metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies.
    Lai S; Pan S; Sun C; Coelho LP; Chen WH; Zhao XM
    Genome Biol; 2022 Nov; 23(1):242. PubMed ID: 36376928
    [TBL] [Abstract][Full Text] [Related]  

  • 28. MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs.
    Brown SM; Chen H; Hao Y; Laungani BP; Ali TA; Dong C; Lijeron C; Kim B; Wultsch C; Pei Z; Krampis K
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30942867
    [TBL] [Abstract][Full Text] [Related]  

  • 29. drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes.
    Lin HH; Liao YC
    Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369462
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity.
    Wang Y; Wang K; Lu YY; Sun F
    BMC Bioinformatics; 2017 Sep; 18(1):425. PubMed ID: 28931373
    [TBL] [Abstract][Full Text] [Related]  

  • 31. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.
    Paez-Espino D; Chen IA; Palaniappan K; Ratner A; Chu K; Szeto E; Pillay M; Huang J; Markowitz VM; Nielsen T; Huntemann M; K Reddy TB; Pavlopoulos GA; Sullivan MB; Campbell BJ; Chen F; McMahon K; Hallam SJ; Denef V; Cavicchioli R; Caffrey SM; Streit WR; Webster J; Handley KM; Salekdeh GH; Tsesmetzis N; Setubal JC; Pope PB; Liu WT; Rivers AR; Ivanova NN; Kyrpides NC
    Nucleic Acids Res; 2017 Jan; 45(D1):D457-D465. PubMed ID: 27799466
    [TBL] [Abstract][Full Text] [Related]  

  • 32. HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs.
    Du Y; Sun F
    Bioinformatics; 2022 May; 38(11):2973-2979. PubMed ID: 35482530
    [TBL] [Abstract][Full Text] [Related]  

  • 33. SRA Down Under: Cache and Analysis Platform for Infectious Disease.
    Cuddihy T; Forde B; Rhodes N; Paterson D; Gorse D; Beatson S; Harris P
    Stud Health Technol Inform; 2019 Aug; 266():76-82. PubMed ID: 31397305
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers' diarrhea.
    Zhu Q; Dupont CL; Jones MB; Pham KM; Jiang ZD; DuPont HL; Highlander SK
    Microbiome; 2018 Nov; 6(1):201. PubMed ID: 30409177
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Transcriptome annotation in the cloud: complexity, best practices, and cost.
    Alvarez RV; Mariño-Ramírez L; Landsman D
    Gigascience; 2021 Jan; 10(2):. PubMed ID: 33511996
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support.
    Abouelhoda M; Issa SA; Ghanem M
    BMC Bioinformatics; 2012 May; 13():77. PubMed ID: 22559942
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
    Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
    BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
    [TBL] [Abstract][Full Text] [Related]  

  • 38. viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data.
    Antipov D; Rayko M; Kolmogorov M; Pevzner PA
    Genome Biol; 2022 Feb; 23(1):57. PubMed ID: 35189932
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Do the human gut metagenomic species possess the minimal set of core functionalities necessary for life?
    Soverini M; Rampelli S; Turroni S; Brigidi P; Biagi E; Candela M
    BMC Genomics; 2020 Sep; 21(1):678. PubMed ID: 32998695
    [TBL] [Abstract][Full Text] [Related]  

  • 40. MetaEuk-sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics.
    Levy Karin E; Mirdita M; Söding J
    Microbiome; 2020 Apr; 8(1):48. PubMed ID: 32245390
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.