BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

315 related articles for article (PubMed ID: 31530818)

  • 21. Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP).
    Gryder BE; Khan J; Stanton BZ
    Nat Protoc; 2020 Mar; 15(3):1209-1236. PubMed ID: 32051612
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representation.
    Roayaei Ardakany A; Gezer HT; Lonardi S; Ay F
    Genome Biol; 2020 Sep; 21(1):256. PubMed ID: 32998764
    [TBL] [Abstract][Full Text] [Related]  

  • 23. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
    Oluwadare O; Cheng J
    BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Analysis of Chromatin Interactions Mediated by Specific Architectural Proteins in Drosophila Cells.
    Ando-Kuri M; Rivera ISM; Rowley MJ; Corces VG
    Methods Mol Biol; 2018; 1766():239-256. PubMed ID: 29605857
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Methods for comparative ChIA-PET and Hi-C data analysis.
    Capurso D; Tang Z; Ruan Y
    Methods; 2020 Jan; 170():69-74. PubMed ID: 31629084
    [TBL] [Abstract][Full Text] [Related]  

  • 26. HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasets.
    Rosen J; Lee L; Abnousi A; Chen J; Wen J; Hu M; Li Y
    Comput Struct Biotechnol J; 2023; 21():931-939. PubMed ID: 38213897
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Protocol to capture transcription factor-mediated 3D chromatin interactions using affinity tag-based BL-HiChIP.
    Ren R; Hua Y; Wang H
    STAR Protoc; 2023 Dec; 4(4):102589. PubMed ID: 37738118
    [TBL] [Abstract][Full Text] [Related]  

  • 28. peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data.
    Geeven G; Teunissen H; de Laat W; de Wit E
    Nucleic Acids Res; 2018 Sep; 46(15):e91. PubMed ID: 29800273
    [TBL] [Abstract][Full Text] [Related]  

  • 29. CTCF-mediated chromatin loops enclose inducible gene regulatory domains.
    Oti M; Falck J; Huynen MA; Zhou H
    BMC Genomics; 2016 Mar; 17():252. PubMed ID: 27004515
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Chromatin loops as allosteric modulators of enhancer-promoter interactions.
    Doyle B; Fudenberg G; Imakaev M; Mirny LA
    PLoS Comput Biol; 2014 Oct; 10(10):e1003867. PubMed ID: 25340767
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Using combined evidence from replicates to evaluate ChIP-seq peaks.
    Jalili V; Matteucci M; Masseroli M; Morelli MJ
    Bioinformatics; 2015 Sep; 31(17):2761-9. PubMed ID: 25957351
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Multiplex chromatin interactions with single-molecule precision.
    Zheng M; Tian SZ; Capurso D; Kim M; Maurya R; Lee B; Piecuch E; Gong L; Zhu JJ; Li Z; Wong CH; Ngan CY; Wang P; Ruan X; Wei CL; Ruan Y
    Nature; 2019 Feb; 566(7745):558-562. PubMed ID: 30778195
    [TBL] [Abstract][Full Text] [Related]  

  • 33. High resolution mapping of enhancer-promoter interactions.
    Reeder C; Closser M; Poh HM; Sandhu K; Wichterle H; Gifford D
    PLoS One; 2015; 10(5):e0122420. PubMed ID: 25970635
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Enhancer prediction in the human genome by probabilistic modelling of the chromatin feature patterns.
    Osmala M; Lähdesmäki H
    BMC Bioinformatics; 2020 Jul; 21(1):317. PubMed ID: 32689977
    [TBL] [Abstract][Full Text] [Related]  

  • 35. DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data.
    Zeng W; Chen X; Duren Z; Wang Y; Jiang R; Wong WH
    Nat Commun; 2019 Oct; 10(1):4613. PubMed ID: 31601804
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Genome-wide prediction of transcription factor binding sites using an integrated model.
    Won KJ; Ren B; Wang W
    Genome Biol; 2010 Jan; 11(1):R7. PubMed ID: 20096096
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Nucleosome eviction and multiple co-factor binding predict estrogen-receptor-alpha-associated long-range interactions.
    He C; Wang X; Zhang MQ
    Nucleic Acids Res; 2014 Jun; 42(11):6935-44. PubMed ID: 24782518
    [TBL] [Abstract][Full Text] [Related]  

  • 38. DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning.
    Li W; Wong WH; Jiang R
    Nucleic Acids Res; 2019 Jun; 47(10):e60. PubMed ID: 30869141
    [TBL] [Abstract][Full Text] [Related]  

  • 39. MSTD: an efficient method for detecting multi-scale topological domains from symmetric and asymmetric 3D genomic maps.
    Ye Y; Gao L; Zhang S
    Nucleic Acids Res; 2019 Jun; 47(11):e65. PubMed ID: 30941409
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Accurate loop calling for 3D genomic data with cLoops.
    Cao Y; Chen Z; Chen X; Ai D; Chen G; McDermott J; Huang Y; Guo X; Han JJ
    Bioinformatics; 2020 Feb; 36(3):666-675. PubMed ID: 31504161
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 16.