BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

325 related articles for article (PubMed ID: 31530818)

  • 41. Learning Micro-C from Hi-C with diffusion models.
    Liu T; Zhu H; Wang Z
    PLoS Comput Biol; 2024 May; 20(5):e1012136. PubMed ID: 38758956
    [TBL] [Abstract][Full Text] [Related]  

  • 42. An Atlas of Promoter Chromatin Modifications and HiChIP Regulatory Interactions in Human Subcutaneous Adipose-Derived Stem Cells.
    Halasz L; Divoux A; Sandor K; Erdos E; Daniel B; Smith SR; Osborne TF
    Int J Mol Sci; 2023 Dec; 25(1):. PubMed ID: 38203607
    [TBL] [Abstract][Full Text] [Related]  

  • 43. cLoops2: a full-stack comprehensive analytical tool for chromatin interactions.
    Cao Y; Liu S; Ren G; Tang Q; Zhao K
    Nucleic Acids Res; 2022 Jan; 50(1):57-71. PubMed ID: 34928392
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Dynamic changes in P300 enhancers and enhancer-promoter contacts control mouse cardiomyocyte maturation.
    Zhou P; VanDusen NJ; Zhang Y; Cao Y; Sethi I; Hu R; Zhang S; Wang G; Ye L; Mazumdar N; Chen J; Zhang X; Guo Y; Li B; Ma Q; Lee JY; Gu W; Yuan GC; Ren B; Chen K; Pu WT
    Dev Cell; 2023 May; 58(10):898-914.e7. PubMed ID: 37071996
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Chromatin Immunoprecipitation and Quantitative Real-Time PCR to Assess Binding of a Protein of Interest to Identified Predicted Binding Sites Within a Promoter.
    Read JE
    Methods Mol Biol; 2017; 1651():23-32. PubMed ID: 28801897
    [TBL] [Abstract][Full Text] [Related]  

  • 46. IDR2D identifies reproducible genomic interactions.
    Krismer K; Guo Y; Gifford DK
    Nucleic Acids Res; 2020 Apr; 48(6):e31. PubMed ID: 32009147
    [TBL] [Abstract][Full Text] [Related]  

  • 47. An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data.
    Carty M; Zamparo L; Sahin M; González A; Pelossof R; Elemento O; Leslie CS
    Nat Commun; 2017 May; 8():15454. PubMed ID: 28513628
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Characteristic arrangement of nucleosomes is predictive of chromatin interactions at kilobase resolution.
    Zhang H; Li F; Jia Y; Xu B; Zhang Y; Li X; Zhang Z
    Nucleic Acids Res; 2017 Dec; 45(22):12739-12751. PubMed ID: 29036650
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Computational Processing and Quality Control of Hi-C, Capture Hi-C and Capture-C Data.
    Hansen P; Gargano M; Hecht J; Ibn-Salem J; Karlebach G; Roehr JT; Robinson PN
    Genes (Basel); 2019 Jul; 10(7):. PubMed ID: 31323892
    [TBL] [Abstract][Full Text] [Related]  

  • 50. HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy test.
    Lagler TM; Abnousi A; Hu M; Yang Y; Li Y
    Am J Hum Genet; 2021 Feb; 108(2):257-268. PubMed ID: 33545029
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Inferring Protein-DNA Binding Profiles at Interspersed Repeats Using HiChIP and PAtChER.
    Taylor D; Branco MR
    Methods Mol Biol; 2023; 2607():199-214. PubMed ID: 36449165
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes.
    Baek S; Sung MH
    Methods Mol Biol; 2016; 1418():225-40. PubMed ID: 27008018
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines.
    Khalil AIS; Muzaki SRBM; Chattopadhyay A; Sanyal A
    BMC Bioinformatics; 2020 Nov; 21(1):506. PubMed ID: 33160308
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Spring Model - Chromatin Modeling Tool Based on OpenMM.
    Kadlof M; Rozycka J; Plewczynski D
    Methods; 2020 Oct; 181-182():62-69. PubMed ID: 31790732
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
    Buisine N; Ruan X; Ruan Y; Sachs LM
    Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895563
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Evaluation of 3D Chromatin Interactions Using Hi-C.
    Hu G
    Methods Mol Biol; 2020; 2117():65-78. PubMed ID: 31960372
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data.
    Miko H; Qiu Y; Gaertner B; Sander M; Ohler U
    BMC Genomics; 2021 Jan; 22(1):84. PubMed ID: 33509077
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Analysis of ChIP-Seq and RNA-Seq Data with BioWardrobe.
    Vallabh S; Kartashov AV; Barski A
    Methods Mol Biol; 2018; 1783():343-360. PubMed ID: 29767371
    [TBL] [Abstract][Full Text] [Related]  

  • 59. GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs.
    Ursu O; Boley N; Taranova M; Wang YXR; Yardimci GG; Stafford Noble W; Kundaje A
    Bioinformatics; 2018 Aug; 34(16):2701-2707. PubMed ID: 29554289
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Integration of 198 ChIP-seq datasets reveals human cis-regulatory regions.
    Bolouri H; Ruzzo WL
    J Comput Biol; 2012 Sep; 19(9):989-97. PubMed ID: 22897152
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 17.