284 related articles for article (PubMed ID: 31553437)
1. Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification.
Breitwieser FP; Salzberg SL
Bioinformatics; 2020 Feb; 36(4):1303-1304. PubMed ID: 31553437
[TBL] [Abstract][Full Text] [Related]
2. animalcules: interactive microbiome analytics and visualization in R.
Zhao Y; Federico A; Faits T; Manimaran S; Segrè D; Monti S; Johnson WE
Microbiome; 2021 Mar; 9(1):76. PubMed ID: 33775256
[TBL] [Abstract][Full Text] [Related]
3. Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking.
McMurdie PJ; Holmes S
Bioinformatics; 2015 Jan; 31(2):282-3. PubMed ID: 25262154
[TBL] [Abstract][Full Text] [Related]
4. KrakenUniq: confident and fast metagenomics classification using unique k-mer counts.
Breitwieser FP; Baker DN; Salzberg SL
Genome Biol; 2018 Nov; 19(1):198. PubMed ID: 30445993
[TBL] [Abstract][Full Text] [Related]
5. RevEcoR: an R package for the reverse ecology analysis of microbiomes.
Cao Y; Wang Y; Zheng X; Li F; Bo X
BMC Bioinformatics; 2016 Jul; 17(1):294. PubMed ID: 27473172
[TBL] [Abstract][Full Text] [Related]
6. Web-igloo: a web based platform for multivariate data visualization.
Kuntal BK; Mande SS
Bioinformatics; 2017 Feb; 33(4):615-617. PubMed ID: 27797774
[TBL] [Abstract][Full Text] [Related]
7. Chordomics: a visualization tool for linking function to phylogeny in microbiomes.
McDonnell K; Waters N; Howley E; Abram F
Bioinformatics; 2020 Feb; 36(4):1309-1310. PubMed ID: 31539022
[TBL] [Abstract][Full Text] [Related]
8. BioSankey: Visualization of Microbial Communities Over Time.
Platzer A; Polzin J; Rembart K; Han PP; Rauer D; Nussbaumer T
J Integr Bioinform; 2018 Jun; 15(4):. PubMed ID: 29897884
[TBL] [Abstract][Full Text] [Related]
9. Dynamic assessment of microbial ecology (DAME): a web app for interactive analysis and visualization of microbial sequencing data.
Piccolo BD; Wankhade UD; Chintapalli SV; Bhattacharyya S; Chunqiao L; Shankar K
Bioinformatics; 2018 Mar; 34(6):1050-1052. PubMed ID: 29087435
[TBL] [Abstract][Full Text] [Related]
10. jHeatmap: an interactive heatmap viewer for the web.
Deu-Pons J; Schroeder MP; Lopez-Bigas N
Bioinformatics; 2014 Jun; 30(12):1757-8. PubMed ID: 24567544
[TBL] [Abstract][Full Text] [Related]
11. SHOGUN: a modular, accurate and scalable framework for microbiome quantification.
Hillmann B; Al-Ghalith GA; Shields-Cutler RR; Zhu Q; Knight R; Knights D
Bioinformatics; 2020 Jul; 36(13):4088-4090. PubMed ID: 32365167
[TBL] [Abstract][Full Text] [Related]
12. SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
Volant S; Lechat P; Woringer P; Motreff L; Campagne P; Malabat C; Kennedy S; Ghozlane A
BMC Bioinformatics; 2020 Aug; 21(1):345. PubMed ID: 32778056
[TBL] [Abstract][Full Text] [Related]
13. EcoPLOT: dynamic analysis of biogeochemical data.
Sanchez CD; Brown JB; Gal-Oz O; Singer E
Bioinformatics; 2022 Feb; 38(5):1480-1482. PubMed ID: 34927685
[TBL] [Abstract][Full Text] [Related]
14. ivTerm-An R package for interactive visualization of functional analysis results of meta-omics data.
Dong X; Xue H; Wei C
J Cell Biochem; 2021 Oct; 122(10):1428-1434. PubMed ID: 34132422
[TBL] [Abstract][Full Text] [Related]
15. MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities.
Reeder J; Huang M; Kaminker JS; Paulson JN
Bioinformatics; 2021 Jun; 37(9):1317-1318. PubMed ID: 32960962
[TBL] [Abstract][Full Text] [Related]
16. MetaTopics: an integration tool to analyze microbial community profile by topic model.
Yan J; Chuai G; Qi T; Shao F; Zhou C; Zhu C; Yang J; Yu Y; Shi C; Kang N; He Y; Liu Q
BMC Genomics; 2017 Jan; 18(Suppl 1):962. PubMed ID: 28198670
[TBL] [Abstract][Full Text] [Related]
17. Flexible design of multiple metagenomics classification pipelines with UGENE.
Rose R; Golosova O; Sukhomlinov D; Tiunov A; Prosperi M
Bioinformatics; 2019 Jun; 35(11):1963-1965. PubMed ID: 30358807
[TBL] [Abstract][Full Text] [Related]
18. MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.
Zhu Z; Niu B; Chen J; Wu S; Sun S; Li W
Bioinformatics; 2013 Jan; 29(1):122-3. PubMed ID: 23044549
[TBL] [Abstract][Full Text] [Related]
19. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks.
Zhou Z; Tran PQ; Breister AM; Liu Y; Kieft K; Cowley ES; Karaoz U; Anantharaman K
Microbiome; 2022 Feb; 10(1):33. PubMed ID: 35172890
[TBL] [Abstract][Full Text] [Related]
20. Fizzy: feature subset selection for metagenomics.
Ditzler G; Morrison JC; Lan Y; Rosen GL
BMC Bioinformatics; 2015 Nov; 16():358. PubMed ID: 26538306
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
