These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

239 related articles for article (PubMed ID: 31553600)

  • 1. Molecular Dynamics Study of the Hybridization between RNA and Modified Oligonucleotides.
    Jing Z; Qi R; Thibonnier M; Ren P
    J Chem Theory Comput; 2019 Nov; 15(11):6422-6432. PubMed ID: 31553600
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Interplay of LNA and 2'-O-methyl RNA in the structure and thermodynamics of RNA hybrid systems: a molecular dynamics study using the revised AMBER force field and comparison with experimental results.
    Yildirim I; Kierzek E; Kierzek R; Schatz GC
    J Phys Chem B; 2014 Dec; 118(49):14177-87. PubMed ID: 25268896
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structures, dynamics, and stabilities of fully modified locked nucleic acid (β-D-LNA and α-L-LNA) duplexes in comparison to pure DNA and RNA duplexes.
    Suresh G; Priyakumar UD
    J Phys Chem B; 2013 May; 117(18):5556-64. PubMed ID: 23617391
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Insights into structure, dynamics and hydration of locked nucleic acid (LNA) strand-based duplexes from molecular dynamics simulations.
    Pande V; Nilsson L
    Nucleic Acids Res; 2008 Mar; 36(5):1508-16. PubMed ID: 18203740
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Atomistic investigation of the effect of incremental modification of deoxyribose sugars by locked nucleic acid (β-D-LNA and α-L-LNA) moieties on the structures and thermodynamics of DNA-RNA hybrid duplexes.
    Suresh G; Priyakumar UD
    J Phys Chem B; 2014 Jun; 118(22):5853-63. PubMed ID: 24845216
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NMR studies of fully modified locked nucleic acid (LNA) hybrids: solution structure of an LNA:RNA hybrid and characterization of an LNA:DNA hybrid.
    Nielsen KE; Rasmussen J; Kumar R; Wengel J; Jacobsen JP; Petersen M
    Bioconjug Chem; 2004; 15(3):449-57. PubMed ID: 15149171
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The conformations of locked nucleic acids (LNA).
    Petersen M; Nielsen CB; Nielsen KE; Jensen GA; Bondensgaard K; Singh SK; Rajwanshi VK; Koshkin AA; Dahl BM; Wengel J; Jacobsen JP
    J Mol Recognit; 2000; 13(1):44-53. PubMed ID: 10679896
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MD simulations of homomorphous PNA, DNA, and RNA single strands: characterization and comparison of conformations and dynamics.
    Sen S; Nilsson L
    J Am Chem Soc; 2001 Aug; 123(30):7414-22. PubMed ID: 11472173
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The free energy landscape of pseudorotation in 3'-5' and 2'-5' linked nucleic acids.
    Li L; Szostak JW
    J Am Chem Soc; 2014 Feb; 136(7):2858-65. PubMed ID: 24499340
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimization of an AMBER force field for the artificial nucleic acid, LNA, and benchmarking with NMR of L(CAAU).
    Condon DE; Yildirim I; Kennedy SD; Mort BC; Kierzek R; Turner DH
    J Phys Chem B; 2014 Feb; 118(5):1216-28. PubMed ID: 24377321
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Structural insight into antisense gapmer-RNA oligomer duplexes through molecular dynamics simulations.
    Uppuladinne MVN; Sonavane UB; Deka RC; Joshi RR
    J Biomol Struct Dyn; 2019 Jul; 37(11):2823-2836. PubMed ID: 30284504
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Duplex recognition by oligonucleotides containing 2'-deoxy-2'-fluoro-D-arabinose and 2'-deoxy-2'-fluoro-D-ribose. Intermolecular 2'-OH-phosphate contacts versus sugar puckering in the stabilization of triple-helical complexes.
    Wilds CJ; Damha MJ
    Bioconjug Chem; 1999; 10(2):299-305. PubMed ID: 10077480
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of the thermodynamics and base-pair dynamics of a full LNA:DNA duplex and of the isosequential DNA:DNA duplex.
    Bruylants G; Boccongelli M; Snoussi K; Bartik K
    Biochemistry; 2009 Sep; 48(35):8473-82. PubMed ID: 19670874
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Potent and sustained cellular inhibition of miR-122 by lysine-derivatized peptide nucleic acids (PNA) and phosphorothioate locked nucleic acid (LNA)/2'-O-methyl (OMe) mixmer anti-miRs in the absence of transfection agents.
    Torres AG; Threlfall RN; Gait MJ
    Artif DNA PNA XNA; 2011; 2(3):71-8. PubMed ID: 22567190
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A Study Modeling Bridged Nucleic Acid-Based ASOs and Their Impact on the Structure and Stability of ASO/RNA Duplexes.
    Dowerah D; V N Uppuladinne M; Paul S; Das D; Gour NK; Biswakarma N; Sarma PJ; Sonavane UB; Joshi RR; Ray SK; Deka RC
    Langmuir; 2024 Oct; 40(41):21407-21426. PubMed ID: 39370641
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The structure of LNA:DNA hybrids from molecular dynamics simulations: the effect of locked nucleotides.
    Ivanova A; Rösch N
    J Phys Chem A; 2007 Sep; 111(38):9307-19. PubMed ID: 17718546
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparison of the thermodynamic stabilities and solution conformations of DNA.RNA hybrids containing purine-rich and pyrimidine-rich strands with DNA and RNA duplexes.
    Gyi JI; Conn GL; Lane AN; Brown T
    Biochemistry; 1996 Sep; 35(38):12538-48. PubMed ID: 8823191
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Backbone Hydrocarbon-Constrained Nucleic Acids Modulate Hybridization Kinetics for RNA.
    Rajasekaran T; Freestone GC; Galindo-Murillo R; Lugato B; Rico L; Salinas JC; Gaus H; Migawa MT; Swayze EE; Cheatham TE; Hanessian S; Seth PP
    J Am Chem Soc; 2022 Feb; 144(4):1941-1950. PubMed ID: 35041415
    [TBL] [Abstract][Full Text] [Related]  

  • 19. LNA effects on DNA binding and conformation: from single strand to duplex and triplex structures.
    Pabon-Martinez YV; Xu Y; Villa A; Lundin KE; Geny S; Nguyen CH; Pedersen EB; Jørgensen PT; Wengel J; Nilsson L; Smith CIE; Zain R
    Sci Rep; 2017 Sep; 7(1):11043. PubMed ID: 28887512
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The free energy of locking a ring: Changing a deoxyribonucleoside to a locked nucleic acid.
    Xu Y; Villa A; Nilsson L
    J Comput Chem; 2017 Jun; 38(15):1147-1157. PubMed ID: 28101966
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.