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6. cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on CPU+GPU. Zhang J; Wang H; Feng WC IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(4):830-843. PubMed ID: 26469393 [TBL] [Abstract][Full Text] [Related]
7. H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs. Ye W; Chen Y; Zhang Y; Xu Y Bioinformatics; 2017 Apr; 33(8):1130-1138. PubMed ID: 28087515 [TBL] [Abstract][Full Text] [Related]
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9. Hardware accelerator for genomic sequence alignment. Chiang J; Studniberg M; Shaw J; Seto S; Truong K Conf Proc IEEE Eng Med Biol Soc; 2006; 2006():5787-9. PubMed ID: 17946720 [TBL] [Abstract][Full Text] [Related]
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12. Implementations of BLAST for parallel computers. Jülich A Comput Appl Biosci; 1995 Feb; 11(1):3-6. PubMed ID: 7796273 [TBL] [Abstract][Full Text] [Related]
13. Performance modelling of parallel BLAST using Intel and PGI compilers on an infiniband-based HPC cluster. Al-Mulhem M; Al-Shaikh R Int J Bioinform Res Appl; 2013; 9(5):534-46. PubMed ID: 24001726 [TBL] [Abstract][Full Text] [Related]
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15. An efficient algorithm after ungapped analysis in BLAST. Garg D; Saxena SC; Bhardwaj LM DNA Seq; 2006 Aug; 17(4):247-53. PubMed ID: 17312943 [TBL] [Abstract][Full Text] [Related]
16. BLAST: improvements for better sequence analysis. Ye J; McGinnis S; Madden TL Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W6-9. PubMed ID: 16845079 [TBL] [Abstract][Full Text] [Related]
17. ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches. Rognes T Nucleic Acids Res; 2001 Apr; 29(7):1647-52. PubMed ID: 11266569 [TBL] [Abstract][Full Text] [Related]