These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

117 related articles for article (PubMed ID: 31583633)

  • 1. Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes.
    Terashi G; Christoffer C; Kihara D
    Methods Mol Biol; 2020; 2074():95-112. PubMed ID: 31583633
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Modeling the assembly order of multimeric heteroprotein complexes.
    Peterson LX; Togawa Y; Esquivel-Rodriguez J; Terashi G; Christoffer C; Roy A; Shin WH; Kihara D
    PLoS Comput Biol; 2018 Jan; 14(1):e1005937. PubMed ID: 29329283
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Multi-LZerD: multiple protein docking for asymmetric complexes.
    Esquivel-Rodríguez J; Yang YD; Kihara D
    Proteins; 2012 Jul; 80(7):1818-33. PubMed ID: 22488467
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.
    Peterson LX; Kim H; Esquivel-Rodriguez J; Roy A; Han X; Shin WH; Zhang J; Terashi G; Lee M; Kihara D
    Proteins; 2017 Mar; 85(3):513-527. PubMed ID: 27654025
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pairwise and multimeric protein-protein docking using the LZerD program suite.
    Esquivel-Rodriguez J; Filos-Gonzalez V; Li B; Kihara D
    Methods Mol Biol; 2014; 1137():209-34. PubMed ID: 24573484
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38-46.
    Christoffer C; Terashi G; Shin WH; Aderinwale T; Maddhuri Venkata Subramaniya SR; Peterson L; Verburgt J; Kihara D
    Proteins; 2020 Aug; 88(8):948-961. PubMed ID: 31697428
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assembly of Protein Complexes in and on the Membrane with Predicted Spatial Arrangement Constraints.
    Christoffer C; Harini K; Archit G; Kihara D
    J Mol Biol; 2024 Mar; 436(6):168486. PubMed ID: 38336197
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein docking prediction using predicted protein-protein interface.
    Li B; Kihara D
    BMC Bioinformatics; 2012 Jan; 13():7. PubMed ID: 22233443
    [TBL] [Abstract][Full Text] [Related]  

  • 9. From Multiple Protein Docking to Protein-Protein Docking at Interactome Level.
    Gabrani R; Jain P; Sharma S; Ghildiyal R; Prakash V
    Methods Mol Biol; 2024; 2780():69-89. PubMed ID: 38987464
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Pairwise and Multi-chain Protein Docking Enhanced Using LZerD Web Server.
    Harini K; Christoffer C; Gromiha MM; Kihara D
    Methods Mol Biol; 2023; 2690():355-373. PubMed ID: 37450159
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection.
    Dapkūnas J; Olechnovič K; Venclovas Č
    Proteins; 2018 Mar; 86 Suppl 1():292-301. PubMed ID: 28905467
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Assembly of Protein Complexes In and On the Membrane with Predicted Spatial Arrangement Constraints.
    Christoffer C; Harini K; Archit G; Kihara D
    bioRxiv; 2023 Nov; ():. PubMed ID: 37961264
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions.
    Hayashi T; Matsuzaki Y; Yanagisawa K; Ohue M; Akiyama Y
    BMC Bioinformatics; 2018 May; 19(Suppl 4):62. PubMed ID: 29745830
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
    Inbar Y; Benyamini H; Nussinov R; Wolfson HJ
    Phys Biol; 2005 Nov; 2(4):S156-65. PubMed ID: 16280621
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y; Wen Z; Wang X; Huang SY
    Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structural modeling of protein complexes: Current capabilities and challenges.
    Dapkūnas J; Olechnovič K; Venclovas Č
    Proteins; 2019 Dec; 87(12):1222-1232. PubMed ID: 31294859
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein Assembly: Defining the Strength of Protein-Protein Interactions Coupling the Theory with Experiments.
    Mei G; Di Venere A; Di Paola L; Finazzi Agrò A
    Methods Mol Biol; 2021; 2253():77-88. PubMed ID: 33315219
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The targets of CAPRI rounds 6-12.
    Janin J
    Proteins; 2007 Dec; 69(4):699-703. PubMed ID: 17671980
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.
    El Houasli M; Maigret B; Devignes MD; Ghoorah AW; Grudinin S; Ritchie DW
    Proteins; 2017 Mar; 85(3):463-469. PubMed ID: 27701764
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.