These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

203 related articles for article (PubMed ID: 31587357)

  • 41. Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.
    Lubecka EA; Karczyńska AS; Lipska AG; Sieradzan AK; Ziȩba K; Sikorska C; Uciechowska U; Samsonov SA; Krupa P; Mozolewska MA; Golon Ł; Giełdoń A; Czaplewski C; Ślusarz R; Ślusarz M; Crivelli SN; Liwo A
    J Mol Graph Model; 2019 Nov; 92():154-166. PubMed ID: 31376733
    [TBL] [Abstract][Full Text] [Related]  

  • 42. High-accuracy protein structure prediction in CASP14.
    Pereira J; Simpkin AJ; Hartmann MD; Rigden DJ; Keegan RM; Lupas AN
    Proteins; 2021 Dec; 89(12):1687-1699. PubMed ID: 34218458
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Critical assessment of methods of protein structure prediction (CASP)-Round XIII.
    Kryshtafovych A; Schwede T; Topf M; Fidelis K; Moult J
    Proteins; 2019 Dec; 87(12):1011-1020. PubMed ID: 31589781
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Recent developments in deep learning applied to protein structure prediction.
    Kandathil SM; Greener JG; Jones DT
    Proteins; 2019 Dec; 87(12):1179-1189. PubMed ID: 31589782
    [TBL] [Abstract][Full Text] [Related]  

  • 45. iQDeep: an integrated web server for protein scoring using multiscale deep learning models.
    Shuvo MH; Karim M; Bhattacharya D
    J Mol Biol; 2023 Jul; 435(14):168057. PubMed ID: 37356909
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Combination of deep neural network with attention mechanism enhances the explainability of protein contact prediction.
    Chen C; Wu T; Guo Z; Cheng J
    Proteins; 2021 Jun; 89(6):697-707. PubMed ID: 33538038
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Assessment of model accuracy estimations in CASP12.
    Kryshtafovych A; Monastyrskyy B; Fidelis K; Schwede T; Tramontano A
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):345-360. PubMed ID: 28833563
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
    Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
    PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
    [TBL] [Abstract][Full Text] [Related]  

  • 49. MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.
    Jones DT; Singh T; Kosciolek T; Tetchner S
    Bioinformatics; 2015 Apr; 31(7):999-1006. PubMed ID: 25431331
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Target highlights in CASP13: Experimental target structures through the eyes of their authors.
    Lepore R; Kryshtafovych A; Alahuhta M; Veraszto HA; Bomble YJ; Bufton JC; Bullock AN; Caba C; Cao H; Davies OR; Desfosses A; Dunne M; Fidelis K; Goulding CW; Gurusaran M; Gutsche I; Harding CJ; Hartmann MD; Hayes CS; Joachimiak A; Leiman PG; Loppnau P; Lovering AL; Lunin VV; Michalska K; Mir-Sanchis I; Mitra AK; Moult J; Phillips GN; Pinkas DM; Rice PA; Tong Y; Topf M; Walton JD; Schwede T
    Proteins; 2019 Dec; 87(12):1037-1057. PubMed ID: 31442339
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Applying and improving AlphaFold at CASP14.
    Jumper J; Evans R; Pritzel A; Green T; Figurnov M; Ronneberger O; Tunyasuvunakool K; Bates R; Žídek A; Potapenko A; Bridgland A; Meyer C; Kohl SAA; Ballard AJ; Cowie A; Romera-Paredes B; Nikolov S; Jain R; Adler J; Back T; Petersen S; Reiman D; Clancy E; Zielinski M; Steinegger M; Pacholska M; Berghammer T; Silver D; Vinyals O; Senior AW; Kavukcuoglu K; Kohli P; Hassabis D
    Proteins; 2021 Dec; 89(12):1711-1721. PubMed ID: 34599769
    [TBL] [Abstract][Full Text] [Related]  

  • 52. NMR-assisted protein structure prediction with MELDxMD.
    Robertson JC; Nassar R; Liu C; Brini E; Dill KA; Perez A
    Proteins; 2019 Dec; 87(12):1333-1340. PubMed ID: 31350773
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins.
    Roche R; Bhattacharya S; Bhattacharya D
    PLoS Comput Biol; 2021 Feb; 17(2):e1008753. PubMed ID: 33621244
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Protein structure determination using metagenome sequence data.
    Ovchinnikov S; Park H; Varghese N; Huang PS; Pavlopoulos GA; Kim DE; Kamisetty H; Kyrpides NC; Baker D
    Science; 2017 Jan; 355(6322):294-298. PubMed ID: 28104891
    [TBL] [Abstract][Full Text] [Related]  

  • 55. MFTrans: A multi-feature transformer network for protein secondary structure prediction.
    Chen Y; Chen G; Chen CY
    Int J Biol Macromol; 2024 May; 267(Pt 1):131311. PubMed ID: 38599417
    [TBL] [Abstract][Full Text] [Related]  

  • 56. CNNcon: improved protein contact maps prediction using cascaded neural networks.
    Ding W; Xie J; Dai D; Zhang H; Xie H; Zhang W
    PLoS One; 2013; 8(4):e61533. PubMed ID: 23626696
    [TBL] [Abstract][Full Text] [Related]  

  • 57. PROFcon: novel prediction of long-range contacts.
    Punta M; Rost B
    Bioinformatics; 2005 Jul; 21(13):2960-8. PubMed ID: 15890748
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Protein structure modeling and refinement by global optimization in CASP12.
    Hong SH; Joung I; Flores-Canales JC; Manavalan B; Cheng Q; Heo S; Kim JY; Lee SY; Nam M; Joo K; Lee IH; Lee SJ; Lee J
    Proteins; 2018 Mar; 86 Suppl 1():122-135. PubMed ID: 29159837
    [TBL] [Abstract][Full Text] [Related]  

  • 59. A comprehensive assessment of sequence-based and template-based methods for protein contact prediction.
    Wu S; Zhang Y
    Bioinformatics; 2008 Apr; 24(7):924-31. PubMed ID: 18296462
    [TBL] [Abstract][Full Text] [Related]  

  • 60. DeepDist: real-value inter-residue distance prediction with deep residual convolutional network.
    Wu T; Guo Z; Hou J; Cheng J
    BMC Bioinformatics; 2021 Jan; 22(1):30. PubMed ID: 33494711
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.