These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS. Alamyar E; Duroux P; Lefranc MP; Giudicelli V Methods Mol Biol; 2012; 882():569-604. PubMed ID: 22665256 [TBL] [Abstract][Full Text] [Related]
3. OGRDB: a reference database of inferred immune receptor genes. Lees W; Busse CE; Corcoran M; Ohlin M; Scheepers C; Matsen FA; Yaari G; Watson CT; ; Collins A; Shepherd AJ Nucleic Acids Res; 2020 Jan; 48(D1):D964-D970. PubMed ID: 31566225 [TBL] [Abstract][Full Text] [Related]
4. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. Bukhari SAC; O'Connor MJ; Martínez-Romero M; Egyedi AL; Willrett D; Graybeal J; Musen MA; Rubelt F; Cheung KH; Kleinstein SH Front Immunol; 2018; 9():1877. PubMed ID: 30166985 [TBL] [Abstract][Full Text] [Related]
5. IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data. Peres A; Lees WD; Rodriguez OL; Lee NY; Polak P; Hope R; Kedmi M; Collins AM; Ohlin M; Kleinstein SH; Watson CT; Yaari G Nucleic Acids Res; 2023 Sep; 51(16):e86. PubMed ID: 37548401 [TBL] [Abstract][Full Text] [Related]
7. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements. Christley S; Scarborough W; Salinas E; Rounds WH; Toby IT; Fonner JM; Levin MK; Kim M; Mock SA; Jordan C; Ostmeyer J; Buntzman A; Rubelt F; Davila ML; Monson NL; Scheuermann RH; Cowell LG Front Immunol; 2018; 9():976. PubMed ID: 29867956 [TBL] [Abstract][Full Text] [Related]
8. TRIg: a robust alignment pipeline for non-regular T-cell receptor and immunoglobulin sequences. Hung SJ; Chen YL; Chu CH; Lee CC; Chen WL; Lin YL; Lin MC; Ho CL; Liu T BMC Bioinformatics; 2016 Oct; 17(1):433. PubMed ID: 27782801 [TBL] [Abstract][Full Text] [Related]
9. VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. Toby IT; Levin MK; Salinas EA; Christley S; Bhattacharya S; Breden F; Buntzman A; Corrie B; Fonner J; Gupta NT; Hershberg U; Marthandan N; Rosenfeld A; Rounds W; Rubelt F; Scarborough W; Scott JK; Uduman M; Vander Heiden JA; Scheuermann RH; Monson N; Kleinstein SH; Cowell LG BMC Bioinformatics; 2016 Oct; 17(Suppl 13):333. PubMed ID: 27766961 [TBL] [Abstract][Full Text] [Related]
10. IMGT/GeneInfo: T cell receptor gamma TRG and delta TRD genes in database give access to all TR potential V(D)J recombinations. Baum TP; Hierle V; Pasqual N; Bellahcene F; Chaume D; Lefranc MP; Jouvin-Marche E; Marche PN; Demongeot J BMC Bioinformatics; 2006 Apr; 7():224. PubMed ID: 16640788 [TBL] [Abstract][Full Text] [Related]
11. ASAP - A Webserver for Immunoglobulin-Sequencing Analysis Pipeline. Avram O; Vaisman-Mentesh A; Yehezkel D; Ashkenazy H; Pupko T; Wine Y Front Immunol; 2018; 9():1686. PubMed ID: 30105017 [TBL] [Abstract][Full Text] [Related]
12. From IMGT-ONTOLOGY to IMGT/LIGMotif: the IMGT standardized approach for immunoglobulin and T cell receptor gene identification and description in large genomic sequences. Lane J; Duroux P; Lefranc MP BMC Bioinformatics; 2010 Apr; 11():223. PubMed ID: 20433708 [TBL] [Abstract][Full Text] [Related]
13. huARdb: human Antigen Receptor database for interactive clonotype-transcriptome analysis at the single-cell level. Wu L; Xue Z; Jin S; Zhang J; Guo Y; Bai Y; Jin X; Wang C; Wang L; Liu Z; Wang JQ; Lu L; Liu W Nucleic Acids Res; 2022 Jan; 50(D1):D1244-D1254. PubMed ID: 34606616 [TBL] [Abstract][Full Text] [Related]
15. Antigen Receptor Galaxy: A User-Friendly, Web-Based Tool for Analysis and Visualization of T and B Cell Receptor Repertoire Data. IJspeert H; van Schouwenburg PA; van Zessen D; Pico-Knijnenburg I; Stubbs AP; van der Burg M J Immunol; 2017 May; 198(10):4156-4165. PubMed ID: 28416602 [TBL] [Abstract][Full Text] [Related]
16. IMGT/HighV-QUEST Statistical Significance of IMGT Clonotype (AA) Diversity per Gene for Standardized Comparisons of Next Generation Sequencing Immunoprofiles of Immunoglobulins and T Cell Receptors. Aouinti S; Malouche D; Giudicelli V; Kossida S; Lefranc MP PLoS One; 2015; 10(11):e0142353. PubMed ID: 26540440 [TBL] [Abstract][Full Text] [Related]
17. HLA Haplotype Validator for quality assessments of HLA typing. Osoegawa K; Mack SJ; Udell J; Noonan DA; Ozanne S; Trachtenberg E; Prestegaard M Hum Immunol; 2016 Mar; 77(3):273-282. PubMed ID: 26546873 [TBL] [Abstract][Full Text] [Related]
19. A community-based resource for automatic exome variant-calling and annotation in Mendelian disorders. Mutarelli M; Marwah V; Rispoli R; Carrella D; Dharmalingam G; Oliva G; di Bernardo D BMC Genomics; 2014; 15 Suppl 3(Suppl 3):S5. PubMed ID: 25078076 [TBL] [Abstract][Full Text] [Related]
20. Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. Gadala-Maria D; Yaari G; Uduman M; Kleinstein SH Proc Natl Acad Sci U S A; 2015 Feb; 112(8):E862-70. PubMed ID: 25675496 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]