These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

238 related articles for article (PubMed ID: 31626280)

  • 1. CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples.
    Liu Y; Bible PW; Zou B; Liang Q; Dong C; Wen X; Li Y; Ge X; Li X; Deng X; Ma R; Guo S; Liang J; Chen T; Pan W; Liu L; Chen W; Wang X; Wei L
    Bioinformatics; 2020 Mar; 36(5):1577-1583. PubMed ID: 31626280
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.
    Ma A; Sun M; McDermaid A; Liu B; Ma Q
    Bioinformatics; 2019 Nov; 35(21):4474-4477. PubMed ID: 31116375
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data.
    Plaza Oñate F; Le Chatelier E; Almeida M; Cervino ACL; Gauthier F; Magoulès F; Ehrlich SD; Pichaud M
    Bioinformatics; 2019 May; 35(9):1544-1552. PubMed ID: 30252023
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Metagenome SNP calling via read-colored de Bruijn graphs.
    Alipanahi B; Muggli MD; Jundi M; Noyes NR; Boucher C
    Bioinformatics; 2021 Apr; 36(22-23):5275-5281. PubMed ID: 32049324
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples.
    Andrusch A; Dabrowski PW; Klenner J; Tausch SH; Kohl C; Osman AA; Renard BY; Nitsche A
    Bioinformatics; 2018 Sep; 34(17):i715-i721. PubMed ID: 30423069
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data.
    Ulyantsev VI; Kazakov SV; Dubinkina VB; Tyakht AV; Alexeev DG
    Bioinformatics; 2016 Sep; 32(18):2760-7. PubMed ID: 27259541
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Metagenomic binning through low-density hashing.
    Luo Y; Yu YW; Zeng J; Berger B; Peng J
    Bioinformatics; 2019 Jan; 35(2):219-226. PubMed ID: 30010790
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts.
    Walker MA; Pedamallu CS; Ojesina AI; Bullman S; Sharpe T; Whelan CW; Meyerson M
    Bioinformatics; 2018 Dec; 34(24):4287-4289. PubMed ID: 29982281
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MIDAS2: Metagenomic Intra-species Diversity Analysis System.
    Zhao C; Dimitrov B; Goldman M; Nayfach S; Pollard KS
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36321886
    [TBL] [Abstract][Full Text] [Related]  

  • 10. gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes.
    Arikan M; Muth T
    Gigascience; 2024 Jan; 13():. PubMed ID: 38995144
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Struo: a pipeline for building custom databases for common metagenome profilers.
    de la Cuesta-Zuluaga J; Ley RE; Youngblut ND
    Bioinformatics; 2020 Apr; 36(7):2314-2315. PubMed ID: 31778148
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PanFP: pangenome-based functional profiles for microbial communities.
    Jun SR; Robeson MS; Hauser LJ; Schadt CW; Gorin AA
    BMC Res Notes; 2015 Sep; 8():479. PubMed ID: 26409790
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
    Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
    Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GenCoF: a graphical user interface to rapidly remove human genome contaminants from metagenomic datasets.
    Czajkowski MD; Vance DP; Frese SA; Casaburi G
    Bioinformatics; 2019 Jul; 35(13):2318-2319. PubMed ID: 30475995
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DeepMAsED: evaluating the quality of metagenomic assemblies.
    Mineeva O; Rojas-Carulla M; Ley RE; Schölkopf B; Youngblut ND
    Bioinformatics; 2020 May; 36(10):3011-3017. PubMed ID: 32096824
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.
    Rodriguez-R LM; Konstantinidis KT
    Bioinformatics; 2014 Mar; 30(5):629-35. PubMed ID: 24123672
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MetaLab: an automated pipeline for metaproteomic data analysis.
    Cheng K; Ning Z; Zhang X; Li L; Liao B; Mayne J; Stintzi A; Figeys D
    Microbiome; 2017 Dec; 5(1):157. PubMed ID: 29197424
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Metagenomic functional profiling: to sketch or not to sketch?
    Hera MR; Liu S; Wei W; Rodriguez JS; Ma C; Koslicki D
    Bioinformatics; 2024 Sep; 40(Suppl 2):ii165-ii173. PubMed ID: 39230701
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MetaMarker: a pipeline for de novo discovery of novel metagenomic biomarkers.
    Koohi-Moghadam M; Borad MJ; Tran NL; Swanson KR; Boardman LA; Sun H; Wang J
    Bioinformatics; 2019 Oct; 35(19):3812-3814. PubMed ID: 30825371
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Exploration and retrieval of whole-metagenome sequencing samples.
    Seth S; Välimäki N; Kaski S; Honkela A
    Bioinformatics; 2014 Sep; 30(17):2471-9. PubMed ID: 24845653
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.