140 related articles for article (PubMed ID: 31667118)
1. Supergene validation: A model-based protocol for assessing the accuracy of non-model-based supergene methods.
Adams RH; Castoe TA
MethodsX; 2019; 6():2181-2188. PubMed ID: 31667118
[TBL] [Abstract][Full Text] [Related]
2. Statistical binning leads to profound model violation due to gene tree error incurred by trying to avoid gene tree error.
Adams RH; Castoe TA
Mol Phylogenet Evol; 2019 May; 134():164-171. PubMed ID: 30790674
[TBL] [Abstract][Full Text] [Related]
3. Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses.
Bayzid MS; Mirarab S; Boussau B; Warnow T
PLoS One; 2015; 10(6):e0129183. PubMed ID: 26086579
[TBL] [Abstract][Full Text] [Related]
4. Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model.
Liu L; Anderson C; Pearl D; Edwards SV
Methods Mol Biol; 2019; 1910():211-239. PubMed ID: 31278666
[TBL] [Abstract][Full Text] [Related]
5. Accounting for Uncertainty in Gene Tree Estimation: Summary-Coalescent Species Tree Inference in a Challenging Radiation of Australian Lizards.
Blom MPK; Bragg JG; Potter S; Moritz C
Syst Biol; 2017 May; 66(3):352-366. PubMed ID: 28039387
[TBL] [Abstract][Full Text] [Related]
6. The Multispecies Coalescent Model Outperforms Concatenation Across Diverse Phylogenomic Data Sets.
Jiang X; Edwards SV; Liu L
Syst Biol; 2020 Jul; 69(4):795-812. PubMed ID: 32011711
[TBL] [Abstract][Full Text] [Related]
7. The gene tree delusion.
Springer MS; Gatesy J
Mol Phylogenet Evol; 2016 Jan; 94(Pt A):1-33. PubMed ID: 26238460
[TBL] [Abstract][Full Text] [Related]
8. Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods.
Ogilvie HA; Heled J; Xie D; Drummond AJ
Syst Biol; 2016 May; 65(3):381-96. PubMed ID: 26821913
[TBL] [Abstract][Full Text] [Related]
9. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
10. An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines.
DeGiorgio M; Syring J; Eckert AJ; Liston A; Cronn R; Neale DB; Rosenberg NA
BMC Evol Biol; 2014 Mar; 14():67. PubMed ID: 24678701
[TBL] [Abstract][Full Text] [Related]
11. Statistical binning enables an accurate coalescent-based estimation of the avian tree.
Mirarab S; Bayzid MS; Boussau B; Warnow T
Science; 2014 Dec; 346(6215):1250463. PubMed ID: 25504728
[TBL] [Abstract][Full Text] [Related]
12. Naive binning improves phylogenomic analyses.
Bayzid MS; Warnow T
Bioinformatics; 2013 Sep; 29(18):2277-84. PubMed ID: 23842808
[TBL] [Abstract][Full Text] [Related]
13. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.
Carstens BC; Knowles LL
Syst Biol; 2007 Jun; 56(3):400-11. PubMed ID: 17520504
[TBL] [Abstract][Full Text] [Related]
14. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods.
Huang H; He Q; Kubatko LS; Knowles LL
Syst Biol; 2010 Oct; 59(5):573-83. PubMed ID: 20833951
[TBL] [Abstract][Full Text] [Related]
15. Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees.
Zhang C; Mirarab S
Mol Biol Evol; 2022 Dec; 39(12):. PubMed ID: 36201617
[TBL] [Abstract][Full Text] [Related]
16. Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting.
Mirarab S; Bayzid MS; Warnow T
Syst Biol; 2016 May; 65(3):366-80. PubMed ID: 25164915
[TBL] [Abstract][Full Text] [Related]
17. On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods.
Roch S; Warnow T
Syst Biol; 2015 Jul; 64(4):663-76. PubMed ID: 25813358
[TBL] [Abstract][Full Text] [Related]
18. Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of Gibbons.
Shi CM; Yang Z
Mol Biol Evol; 2018 Jan; 35(1):159-179. PubMed ID: 29087487
[TBL] [Abstract][Full Text] [Related]
19. Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased.
Xi Z; Liu L; Davis CC
Mol Phylogenet Evol; 2015 Nov; 92():63-71. PubMed ID: 26115844
[TBL] [Abstract][Full Text] [Related]
20. Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia).
Pyron RA; Hendry CR; Chou VM; Lemmon EM; Lemmon AR; Burbrink FT
Mol Phylogenet Evol; 2014 Dec; 81():221-31. PubMed ID: 25193610
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
