186 related articles for article (PubMed ID: 31673037)
1. Improved 18S and 28S rDNA primer sets for NGS-based parasite detection.
Kounosu A; Murase K; Yoshida A; Maruyama H; Kikuchi T
Sci Rep; 2019 Oct; 9(1):15789. PubMed ID: 31673037
[TBL] [Abstract][Full Text] [Related]
2. Short- and long-read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing.
Latz MAC; Grujcic V; Brugel S; Lycken J; John U; Karlson B; Andersson A; Andersson AF
Mol Ecol Resour; 2022 Aug; 22(6):2304-2318. PubMed ID: 35437888
[TBL] [Abstract][Full Text] [Related]
3. Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing.
Flaherty BR; Barratt J; Lane M; Talundzic E; Bradbury RS
Microbiome; 2021 Jan; 9(1):1. PubMed ID: 33388088
[TBL] [Abstract][Full Text] [Related]
4. Coamplification of eukaryotic DNA with 16S rRNA gene-based PCR primers: possible consequences for population fingerprinting of complex microbial communities.
Huys G; Vanhoutte T; Joossens M; Mahious AS; De Brandt E; Vermeire S; Swings J
Curr Microbiol; 2008 Jun; 56(6):553-7. PubMed ID: 18301945
[TBL] [Abstract][Full Text] [Related]
5. Comparative analyses of the V4 and V9 regions of 18S rDNA for the extant eukaryotic community using the Illumina platform.
Choi J; Park JS
Sci Rep; 2020 Apr; 10(1):6519. PubMed ID: 32300168
[TBL] [Abstract][Full Text] [Related]
6. Identification of eukaryotic microorganisms with 18S rRNA next-generation sequencing in wastewater treatment plants, with a more targeted NGS approach required for Cryptosporidium detection.
Zahedi A; Greay TL; Paparini A; Linge KL; Joll CA; Ryan UM
Water Res; 2019 Jul; 158():301-312. PubMed ID: 31051375
[TBL] [Abstract][Full Text] [Related]
7. A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms.
Banos S; Lentendu G; Kopf A; Wubet T; Glöckner FO; Reich M
BMC Microbiol; 2018 Nov; 18(1):190. PubMed ID: 30458701
[TBL] [Abstract][Full Text] [Related]
8. Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia.
Hugerth LW; Muller EE; Hu YO; Lebrun LA; Roume H; Lundin D; Wilmes P; Andersson AF
PLoS One; 2014; 9(4):e95567. PubMed ID: 24755918
[TBL] [Abstract][Full Text] [Related]
9. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.
Parada AE; Needham DM; Fuhrman JA
Environ Microbiol; 2016 May; 18(5):1403-14. PubMed ID: 26271760
[TBL] [Abstract][Full Text] [Related]
10. PCR amplification of a long rDNA segment with one primer pair in agriculturally important nematodes.
Carta LK; Li S
J Nematol; 2019; 51():1-8. PubMed ID: 31157959
[TBL] [Abstract][Full Text] [Related]
11. Characterization of the 18S rRNA gene for designing universal eukaryote specific primers.
Hadziavdic K; Lekang K; Lanzen A; Jonassen I; Thompson EM; Troedsson C
PLoS One; 2014; 9(2):e87624. PubMed ID: 24516555
[TBL] [Abstract][Full Text] [Related]
12. Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing.
Flaherty BR; Talundzic E; Barratt J; Kines KJ; Olsen C; Lane M; Sheth M; Bradbury RS
Microbiome; 2018 Sep; 6(1):164. PubMed ID: 30223888
[TBL] [Abstract][Full Text] [Related]
13. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.
Klindworth A; Pruesse E; Schweer T; Peplies J; Quast C; Horn M; Glöckner FO
Nucleic Acids Res; 2013 Jan; 41(1):e1. PubMed ID: 22933715
[TBL] [Abstract][Full Text] [Related]
14. Design and Evaluation of Illumina MiSeq-Compatible, 18S rRNA Gene-Specific Primers for Improved Characterization of Mixed Phototrophic Communities.
Bradley IM; Pinto AJ; Guest JS
Appl Environ Microbiol; 2016 Oct; 82(19):5878-91. PubMed ID: 27451454
[TBL] [Abstract][Full Text] [Related]
15. Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities, and estimation of sequencing bias against 18S.
Yeh YC; McNichol J; Needham DM; Fichot EB; Berdjeb L; Fuhrman JA
Environ Microbiol; 2021 Jun; 23(6):3240-3250. PubMed ID: 33938123
[TBL] [Abstract][Full Text] [Related]
16. Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.
Karst SM; Dueholm MS; McIlroy SJ; Kirkegaard RH; Nielsen PH; Albertsen M
Nat Biotechnol; 2018 Feb; 36(2):190-195. PubMed ID: 29291348
[TBL] [Abstract][Full Text] [Related]
17. PCR primers for metazoan nuclear 18S and 28S ribosomal DNA sequences.
Machida RJ; Knowlton N
PLoS One; 2012; 7(9):e46180. PubMed ID: 23049971
[TBL] [Abstract][Full Text] [Related]
18. Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes.
Mori H; Maruyama F; Kato H; Toyoda A; Dozono A; Ohtsubo Y; Nagata Y; Fujiyama A; Tsuda M; Kurokawa K
DNA Res; 2014; 21(2):217-27. PubMed ID: 24277737
[TBL] [Abstract][Full Text] [Related]
19. Obtaining long 16S rDNA sequences using multiple primers and its application on dioxin-containing samples.
Chen YL; Lee CC; Lin YL; Yin KM; Ho CL; Liu T
BMC Bioinformatics; 2015; 16 Suppl 18(Suppl 18):S13. PubMed ID: 26681335
[TBL] [Abstract][Full Text] [Related]
20. Optimal eukaryotic 18S and universal 16S/18S ribosomal RNA primers and their application in a study of symbiosis.
Wang Y; Tian RM; Gao ZM; Bougouffa S; Qian PY
PLoS One; 2014; 9(3):e90053. PubMed ID: 24594623
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]