165 related articles for article (PubMed ID: 31681950)
1. CASPR, an analysis pipeline for single and paired guide RNA CRISPR screens, reveals optimal target selection for long non-coding RNAs.
Bergadà-Pijuan J; Pulido-Quetglas C; Vancura A; Johnson R
Bioinformatics; 2020 Mar; 36(6):1673-1680. PubMed ID: 31681950
[TBL] [Abstract][Full Text] [Related]
2. Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library.
Zhu S; Li W; Liu J; Chen CH; Liao Q; Xu P; Xu H; Xiao T; Cao Z; Peng J; Yuan P; Brown M; Liu XS; Wei W
Nat Biotechnol; 2016 Dec; 34(12):1279-1286. PubMed ID: 27798563
[TBL] [Abstract][Full Text] [Related]
3. MultiGuideScan: a multi-processing tool for designing CRISPR guide RNA libraries.
Li T; Wang S; Luo F; Wu FX; Wang J
Bioinformatics; 2020 Feb; 36(3):920-921. PubMed ID: 31386102
[TBL] [Abstract][Full Text] [Related]
4. CRISPR Interference (CRISPRi) and CRISPR Activation (CRISPRa) to Explore the Oncogenic lncRNA Network.
Morelli E; Gulla' A; Amodio N; Taiana E; Neri A; Fulciniti M; Munshi NC
Methods Mol Biol; 2021; 2348():189-204. PubMed ID: 34160808
[TBL] [Abstract][Full Text] [Related]
5. Crisflash: open-source software to generate CRISPR guide RNAs against genomes annotated with individual variation.
Jacquin ALS; Odom DT; Lukk M
Bioinformatics; 2019 Sep; 35(17):3146-3147. PubMed ID: 30649181
[TBL] [Abstract][Full Text] [Related]
6. Designing libraries for pooled CRISPR functional screens of long noncoding RNAs.
Pulido-Quetglas C; Johnson R
Mamm Genome; 2022 Jun; 33(2):312-327. PubMed ID: 34533605
[TBL] [Abstract][Full Text] [Related]
7. MAUDE: inferring expression changes in sorting-based CRISPR screens.
de Boer CG; Ray JP; Hacohen N; Regev A
Genome Biol; 2020 Jun; 21(1):134. PubMed ID: 32493396
[TBL] [Abstract][Full Text] [Related]
8. Modeling CRISPR-Cas13d on-target and off-target effects using machine learning approaches.
Cheng X; Li Z; Shan R; Li Z; Wang S; Zhao W; Zhang H; Chao L; Peng J; Fei T; Li W
Nat Commun; 2023 Feb; 14(1):752. PubMed ID: 36765063
[TBL] [Abstract][Full Text] [Related]
9. CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing.
Cancellieri S; Canver MC; Bombieri N; Giugno R; Pinello L
Bioinformatics; 2020 Apr; 36(7):2001-2008. PubMed ID: 31764961
[TBL] [Abstract][Full Text] [Related]
10. GuideScan software for improved single and paired CRISPR guide RNA design.
Perez AR; Pritykin Y; Vidigal JA; Chhangawala S; Zamparo L; Leslie CS; Ventura A
Nat Biotechnol; 2017 Apr; 35(4):347-349. PubMed ID: 28263296
[TBL] [Abstract][Full Text] [Related]
11. Multicenter integrated analysis of noncoding CRISPRi screens.
Yao D; Tycko J; Oh JW; Bounds LR; Gosai SJ; Lataniotis L; Mackay-Smith A; Doughty BR; Gabdank I; Schmidt H; Guerrero-Altamirano T; Siklenka K; Guo K; White AD; Youngworth I; Andreeva K; Ren X; Barrera A; Luo Y; Yardımcı GG; Tewhey R; Kundaje A; Greenleaf WJ; Sabeti PC; Leslie C; Pritykin Y; Moore JE; Beer MA; Gersbach CA; Reddy TE; Shen Y; Engreitz JM; Bassik MC; Reilly SK
Nat Methods; 2024 Apr; 21(4):723-734. PubMed ID: 38504114
[TBL] [Abstract][Full Text] [Related]
12. Generalizable sgRNA design for improved CRISPR/Cas9 editing efficiency.
Hiranniramol K; Chen Y; Liu W; Wang X
Bioinformatics; 2020 May; 36(9):2684-2689. PubMed ID: 31971562
[TBL] [Abstract][Full Text] [Related]
13. Hacking the Cancer Genome: Profiling Therapeutically Actionable Long Non-coding RNAs Using CRISPR-Cas9 Screening.
Esposito R; Bosch N; Lanzós A; Polidori T; Pulido-Quetglas C; Johnson R
Cancer Cell; 2019 Apr; 35(4):545-557. PubMed ID: 30827888
[TBL] [Abstract][Full Text] [Related]
14. Improved design and analysis of CRISPR knockout screens.
Chen CH; Xiao T; Xu H; Jiang P; Meyer CA; Li W; Brown M; Liu XS
Bioinformatics; 2018 Dec; 34(23):4095-4101. PubMed ID: 29868757
[TBL] [Abstract][Full Text] [Related]
15. In vivo CRISPR screening for novel noncoding RNA functional targets in glioblastoma models.
Attenello FJ; Tsung K; Bishara I; Loh YE; Chen TC
J Neurosci Res; 2021 Sep; 99(9):2029-2045. PubMed ID: 33969526
[TBL] [Abstract][Full Text] [Related]
16. Paired guide RNA CRISPR-Cas9 screening for protein-coding genes and lncRNAs involved in transdifferentiation of human B-cells to macrophages.
Arnan C; Ullrich S; Pulido-Quetglas C; Nurtdinov R; Esteban A; Blanco-Fernandez J; Aparicio-Prat E; Johnson R; Pérez-Lluch S; Guigó R
BMC Genomics; 2022 May; 23(1):402. PubMed ID: 35619054
[TBL] [Abstract][Full Text] [Related]
17. Effective knockdown of Drosophila long non-coding RNAs by CRISPR interference.
Ghosh S; Tibbit C; Liu JL
Nucleic Acids Res; 2016 May; 44(9):e84. PubMed ID: 26850642
[TBL] [Abstract][Full Text] [Related]
18. CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs.
Chen W; Zhang G; Li J; Zhang X; Huang S; Xiang S; Hu X; Liu C
Nucleic Acids Res; 2019 Jan; 47(D1):D63-D68. PubMed ID: 30285246
[TBL] [Abstract][Full Text] [Related]
19. CRISPR-Local: a local single-guide RNA (sgRNA) design tool for non-reference plant genomes.
Sun J; Liu H; Liu J; Cheng S; Peng Y; Zhang Q; Yan J; Liu HJ; Chen LL
Bioinformatics; 2019 Jul; 35(14):2501-2503. PubMed ID: 30500879
[TBL] [Abstract][Full Text] [Related]
20. SeqCor: correct the effect of guide RNA sequences in clustered regularly interspaced short palindromic repeats/Cas9 screening by machine learning algorithm.
Liu X; Yang Y; Qiu Y; Reyad-Ul-Ferdous M; Ding Q; Wang Y
J Genet Genomics; 2020 Nov; 47(11):672-680. PubMed ID: 33451939
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]