277 related articles for article (PubMed ID: 31694538)
1. The effect of alignment uncertainty, substitution models and priors in building and dating the mammal tree of life.
Du Y; Wu S; Edwards SV; Liu L
BMC Evol Biol; 2019 Nov; 19(1):203. PubMed ID: 31694538
[TBL] [Abstract][Full Text] [Related]
2. Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci.
Zhu T; Dos Reis M; Yang Z
Syst Biol; 2015 Mar; 64(2):267-80. PubMed ID: 25503979
[TBL] [Abstract][Full Text] [Related]
3. The gene tree delusion.
Springer MS; Gatesy J
Mol Phylogenet Evol; 2016 Jan; 94(Pt A):1-33. PubMed ID: 26238460
[TBL] [Abstract][Full Text] [Related]
4. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions.
Liu L; Pearl DK
Syst Biol; 2007 Jun; 56(3):504-14. PubMed ID: 17562474
[TBL] [Abstract][Full Text] [Related]
5. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
6. Impacts of Taxon-Sampling Schemes on Bayesian Tip Dating Under the Fossilized Birth-Death Process.
Luo A; Zhang C; Zhou QS; Ho SYW; Zhu CD
Syst Biol; 2023 Aug; 72(4):781-801. PubMed ID: 36919368
[TBL] [Abstract][Full Text] [Related]
7. The impact of the rate prior on Bayesian estimation of divergence times with multiple Loci.
Dos Reis M; Zhu T; Yang Z
Syst Biol; 2014 Jul; 63(4):555-65. PubMed ID: 24658316
[TBL] [Abstract][Full Text] [Related]
8. StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates.
Ogilvie HA; Bouckaert RR; Drummond AJ
Mol Biol Evol; 2017 Aug; 34(8):2101-2114. PubMed ID: 28431121
[TBL] [Abstract][Full Text] [Related]
9. The Multispecies Coalescent Model Outperforms Concatenation Across Diverse Phylogenomic Data Sets.
Jiang X; Edwards SV; Liu L
Syst Biol; 2020 Jul; 69(4):795-812. PubMed ID: 32011711
[TBL] [Abstract][Full Text] [Related]
10. The Implications of Incongruence between Gene Tree and Species Tree Topologies for Divergence Time Estimation.
Carruthers T; Sun M; Baker WJ; Smith SA; de Vos JM; Eiserhardt WL
Syst Biol; 2022 Aug; 71(5):1124-1146. PubMed ID: 35167690
[TBL] [Abstract][Full Text] [Related]
11. Filtration of Gene Trees From 9,000 Exons, Introns, and UCEs Disentangles Conflicting Phylogenomic Relationships in Tree Frogs (Hylidae).
Hutter CR; Duellman W
Genome Biol Evol; 2023 May; 15(5):. PubMed ID: 37129064
[TBL] [Abstract][Full Text] [Related]
12. Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation.
Upham NS; Esselstyn JA; Jetz W
PLoS Biol; 2019 Dec; 17(12):e3000494. PubMed ID: 31800571
[TBL] [Abstract][Full Text] [Related]
13. Molecular Clocks without Rocks: New Solutions for Old Problems.
Tiley GP; Poelstra JW; Dos Reis M; Yang Z; Yoder AD
Trends Genet; 2020 Nov; 36(11):845-856. PubMed ID: 32709458
[TBL] [Abstract][Full Text] [Related]
14. Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model.
Liu L; Anderson C; Pearl D; Edwards SV
Methods Mol Biol; 2019; 1910():211-239. PubMed ID: 31278666
[TBL] [Abstract][Full Text] [Related]
15. Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics.
Edwards SV; Xi Z; Janke A; Faircloth BC; McCormack JE; Glenn TC; Zhong B; Wu S; Lemmon EM; Lemmon AR; Leaché AD; Liu L; Davis CC
Mol Phylogenet Evol; 2016 Jan; 94(Pt A):447-62. PubMed ID: 26518740
[TBL] [Abstract][Full Text] [Related]
16. Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased.
Xi Z; Liu L; Davis CC
Mol Phylogenet Evol; 2015 Nov; 92():63-71. PubMed ID: 26115844
[TBL] [Abstract][Full Text] [Related]
17. Unguided species delimitation using DNA sequence data from multiple Loci.
Yang Z; Rannala B
Mol Biol Evol; 2014 Dec; 31(12):3125-35. PubMed ID: 25274273
[TBL] [Abstract][Full Text] [Related]
18. Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model.
Song S; Liu L; Edwards SV; Wu S
Proc Natl Acad Sci U S A; 2012 Sep; 109(37):14942-7. PubMed ID: 22930817
[TBL] [Abstract][Full Text] [Related]
19. Accounting for Uncertainty in Gene Tree Estimation: Summary-Coalescent Species Tree Inference in a Challenging Radiation of Australian Lizards.
Blom MPK; Bragg JG; Potter S; Moritz C
Syst Biol; 2017 May; 66(3):352-366. PubMed ID: 28039387
[TBL] [Abstract][Full Text] [Related]
20. Bayesian Molecular Clock Dating Using Genome-Scale Datasets.
Dos Reis M; Yang Z
Methods Mol Biol; 2019; 1910():309-330. PubMed ID: 31278669
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]