164 related articles for article (PubMed ID: 31699036)
1. Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data.
Wijfjes RY; Smit S; de Ridder D
BMC Genomics; 2019 Nov; 20(1):818. PubMed ID: 31699036
[TBL] [Abstract][Full Text] [Related]
2. Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location.
Zmienko A; Samelak-Czajka A; Kozlowski P; Szymanska M; Figlerowicz M
BMC Genomics; 2016 Nov; 17(1):893. PubMed ID: 27825302
[TBL] [Abstract][Full Text] [Related]
3. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
[TBL] [Abstract][Full Text] [Related]
4. Evaluation of the performance of copy number variant prediction tools for the detection of deletions from whole genome sequencing data.
Whitford W; Lehnert K; Snell RG; Jacobsen JC
J Biomed Inform; 2019 Jun; 94():103174. PubMed ID: 30965134
[TBL] [Abstract][Full Text] [Related]
5. A Deep Learning Approach for Detecting Copy Number Variation in Next-Generation Sequencing Data.
Hill T; Unckless RL
G3 (Bethesda); 2019 Nov; 9(11):3575-3582. PubMed ID: 31455677
[TBL] [Abstract][Full Text] [Related]
6. A Comprehensive Workflow for Read Depth-Based Identification of Copy-Number Variation from Whole-Genome Sequence Data.
Trost B; Walker S; Wang Z; Thiruvahindrapuram B; MacDonald JR; Sung WWL; Pereira SL; Whitney J; Chan AJS; Pellecchia G; Reuter MS; Lok S; Yuen RKC; Marshall CR; Merico D; Scherer SW
Am J Hum Genet; 2018 Jan; 102(1):142-155. PubMed ID: 29304372
[TBL] [Abstract][Full Text] [Related]
7. Noise cancellation using total variation for copy number variation detection.
Zare F; Hosny A; Nabavi S
BMC Bioinformatics; 2018 Oct; 19(Suppl 11):361. PubMed ID: 30343665
[TBL] [Abstract][Full Text] [Related]
8. A machine learning framework for genotyping the structural variations with copy number variant.
Zheng T; Zhu X; Zhang X; Zhao Z; Yi X; Wang J; Li H
BMC Med Genomics; 2020 Aug; 13(Suppl 6):79. PubMed ID: 32854699
[TBL] [Abstract][Full Text] [Related]
9. Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures.
Bickhart DM
Methods Mol Biol; 2018; 1833():143-153. PubMed ID: 30039370
[TBL] [Abstract][Full Text] [Related]
10. CNV-CH: A Convex Hull Based Segmentation Approach to Detect Copy Number Variations (CNV) Using Next-Generation Sequencing Data.
Sinha R; Samaddar S; De RK
PLoS One; 2015; 10(8):e0135895. PubMed ID: 26291322
[TBL] [Abstract][Full Text] [Related]
11. CNV-RF Is a Random Forest-Based Copy Number Variation Detection Method Using Next-Generation Sequencing.
Onsongo G; Baughn LB; Bower M; Henzler C; Schomaker M; Silverstein KA; Thyagarajan B
J Mol Diagn; 2016 Nov; 18(6):872-881. PubMed ID: 27597741
[TBL] [Abstract][Full Text] [Related]
12. Copy number variation shapes genome diversity in Arabidopsis over immediate family generational scales.
DeBolt S
Genome Biol Evol; 2010 Jul; 2():441-53. PubMed ID: 20624746
[TBL] [Abstract][Full Text] [Related]
13. Detection and assessment of copy number variation using PacBio long-read and Illumina sequencing in New Zealand dairy cattle.
Couldrey C; Keehan M; Johnson T; Tiplady K; Winkelman A; Littlejohn MD; Scott A; Kemper KE; Hayes B; Davis SR; Spelman RJ
J Dairy Sci; 2017 Jul; 100(7):5472-5478. PubMed ID: 28456410
[TBL] [Abstract][Full Text] [Related]
14. CNVs into the wild: screening the genomes of conifer trees (Picea spp.) reveals fewer gene copy number variations in hybrids and links to adaptation.
Prunier J; Caron S; MacKay J
BMC Genomics; 2017 Jan; 18(1):97. PubMed ID: 28100184
[TBL] [Abstract][Full Text] [Related]
15. Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans.
Haraksingh RR; Abyzov A; Urban AE
BMC Genomics; 2017 Apr; 18(1):321. PubMed ID: 28438122
[TBL] [Abstract][Full Text] [Related]
16. De novo detection of copy number variation by co-assembly.
Nijkamp JF; van den Broek MA; Geertman JM; Reinders MJ; Daran JM; de Ridder D
Bioinformatics; 2012 Dec; 28(24):3195-202. PubMed ID: 23047563
[TBL] [Abstract][Full Text] [Related]
17. Comparison of sequencing based CNV discovery methods using monozygotic twin quartets.
Legault MA; Girard S; Lemieux Perreault LP; Rouleau GA; Dubé MP
PLoS One; 2015; 10(3):e0122287. PubMed ID: 25812131
[TBL] [Abstract][Full Text] [Related]
18. SM-RCNV: a statistical method to detect recurrent copy number variations in sequenced samples.
Li Y; Yuan X; Zhang J; Yang L; Bai J; Jiang S
Genes Genomics; 2019 May; 41(5):529-536. PubMed ID: 30779024
[TBL] [Abstract][Full Text] [Related]
19. A genome-wide survey of copy number variations reveals an asymmetric evolution of duplicated genes in rice.
Zhao F; Wang Y; Zheng J; Wen Y; Qu M; Kang S; Wu S; Deng X; Hong K; Li S; Qin X; Wu Z; Wang X; Ai C; Li A; Zeng L; Hu J; Zeng D; Shang L; Wang Q; Qian Q; Ruan J; Xiong G
BMC Biol; 2020 Jun; 18(1):73. PubMed ID: 32591023
[TBL] [Abstract][Full Text] [Related]
20. Evaluation of somatic copy number estimation tools for whole-exome sequencing data.
Nam JY; Kim NK; Kim SC; Joung JG; Xi R; Lee S; Park PJ; Park WY
Brief Bioinform; 2016 Mar; 17(2):185-92. PubMed ID: 26210357
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]