178 related articles for article (PubMed ID: 31703550)
1. Optimal sequencing depth design for whole genome re-sequencing in pigs.
Jiang Y; Jiang Y; Wang S; Zhang Q; Ding X
BMC Bioinformatics; 2019 Nov; 20(1):556. PubMed ID: 31703550
[TBL] [Abstract][Full Text] [Related]
2. Empirical evaluation of variant calling accuracy using ultra-deep whole-genome sequencing data.
Kishikawa T; Momozawa Y; Ozeki T; Mushiroda T; Inohara H; Kamatani Y; Kubo M; Okada Y
Sci Rep; 2019 Feb; 9(1):1784. PubMed ID: 30741997
[TBL] [Abstract][Full Text] [Related]
3. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
Shringarpure SS; Mathias RA; Hernandez RD; O'Connor TD; Szpiech ZA; Torres R; De La Vega FM; Bustamante CD; Barnes KC; Taub MA;
Bioinformatics; 2017 Apr; 33(8):1147-1153. PubMed ID: 28035032
[TBL] [Abstract][Full Text] [Related]
4. Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten.
Nair SS; Luu PL; Qu W; Maddugoda M; Huschtscha L; Reddel R; Chenevix-Trench G; Toso M; Kench JG; Horvath LG; Hayes VM; Stricker PD; Hughes TP; White DL; Rasko JEJ; Wong JJ; Clark SJ
Epigenetics Chromatin; 2018 May; 11(1):24. PubMed ID: 29807544
[TBL] [Abstract][Full Text] [Related]
5. Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals.
Cheng AY; Teo YY; Ong RT
Bioinformatics; 2014 Jun; 30(12):1707-13. PubMed ID: 24558117
[TBL] [Abstract][Full Text] [Related]
6. An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity.
Benjelloun B; Boyer F; Streeter I; Zamani W; Engelen S; Alberti A; Alberto FJ; BenBati M; Ibnelbachyr M; Chentouf M; Bechchari A; Rezaei HR; Naderi S; Stella A; Chikhi A; Clarke L; Kijas J; Flicek P; Taberlet P; Pompanon F
Mol Ecol Resour; 2019 Nov; 19(6):1497-1515. PubMed ID: 31359622
[TBL] [Abstract][Full Text] [Related]
7. An efficient and tunable parameter to improve variant calling for whole genome and exome sequencing data.
Ahn YJ; Markkandan K; Baek IP; Mun S; Lee W; Kim HS; Han K
Genes Genomics; 2018 Jan; 40(1):39-47. PubMed ID: 29892897
[TBL] [Abstract][Full Text] [Related]
8. Evaluation of SNP calling using single and multiple-sample calling algorithms by validation against array base genotyping and Mendelian inheritance.
Kumar P; Al-Shafai M; Al Muftah WA; Chalhoub N; Elsaid MF; Aleem AA; Suhre K
BMC Res Notes; 2014 Oct; 7():747. PubMed ID: 25339461
[TBL] [Abstract][Full Text] [Related]
9. Evaluation of variant calling tools for large plant genome re-sequencing.
Yao Z; You FM; N'Diaye A; Knox RE; McCartney C; Hiebert CW; Pozniak C; Xu W
BMC Bioinformatics; 2020 Aug; 21(1):360. PubMed ID: 32807073
[TBL] [Abstract][Full Text] [Related]
10. Comparison of seven SNP calling pipelines for the next-generation sequencing data of chickens.
Liu J; Shen Q; Bao H
PLoS One; 2022; 17(1):e0262574. PubMed ID: 35100292
[TBL] [Abstract][Full Text] [Related]
11. Very low-depth whole-genome sequencing in complex trait association studies.
Gilly A; Southam L; Suveges D; Kuchenbaecker K; Moore R; Melloni GEM; Hatzikotoulas K; Farmaki AE; Ritchie G; Schwartzentruber J; Danecek P; Kilian B; Pollard MO; Ge X; Tsafantakis E; Dedoussis G; Zeggini E
Bioinformatics; 2019 Aug; 35(15):2555-2561. PubMed ID: 30576415
[TBL] [Abstract][Full Text] [Related]
12. A comparative investigation of single nucleotide variant calling for a personal non-Caucasian sequencing sample.
Park H; Gim J
Genes Genomics; 2023 Dec; 45(12):1527-1536. PubMed ID: 37651066
[TBL] [Abstract][Full Text] [Related]
13. Comparing variant calling algorithms for target-exon sequencing in a large sample.
Lo Y; Kang HM; Nelson MR; Othman MI; Chissoe SL; Ehm MG; Abecasis GR; Zöllner S
BMC Bioinformatics; 2015 Mar; 16():75. PubMed ID: 25884587
[TBL] [Abstract][Full Text] [Related]
14. Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing.
Zhou Y; Leung AW; Ahmed SS; Lam TW; Luo R
BMC Bioinformatics; 2022 Nov; 23(1):465. PubMed ID: 36344913
[TBL] [Abstract][Full Text] [Related]
15. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
Edge P; Bansal V
Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
[TBL] [Abstract][Full Text] [Related]
16. Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.
Roberts HE; Lopopolo M; Pagnamenta AT; Sharma E; Parkes D; Lonie L; Freeman C; Knight SJL; Lunter G; Dreau H; Lockstone H; Taylor JC; Schuh A; Bowden R; Buck D
Sci Rep; 2021 Mar; 11(1):6408. PubMed ID: 33742045
[TBL] [Abstract][Full Text] [Related]
17. Deep whole-genome sequencing of 90 Han Chinese genomes.
Lan T; Lin H; Zhu W; Laurent TCAM; Yang M; Liu X; Wang J; Wang J; Yang H; Xu X; Guo X
Gigascience; 2017 Sep; 6(9):1-7. PubMed ID: 28938720
[TBL] [Abstract][Full Text] [Related]
18. Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data.
Liu Q; Guo Y; Li J; Long J; Zhang B; Shyr Y
BMC Genomics; 2012; 13 Suppl 8(Suppl 8):S8. PubMed ID: 23281772
[TBL] [Abstract][Full Text] [Related]
19. A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy.
Wickland DP; Battu G; Hudson KA; Diers BW; Hudson ME
BMC Bioinformatics; 2017 Dec; 18(1):586. PubMed ID: 29281959
[TBL] [Abstract][Full Text] [Related]
20. Combining genome-wide association study based on low-coverage whole genome sequencing and transcriptome analysis to reveal the key candidate genes affecting meat color in pigs.
Zha C; Liu K; Wu J; Li P; Hou L; Liu H; Huang R; Wu W
Anim Genet; 2023 Jun; 54(3):295-306. PubMed ID: 36727217
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
