These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

139 related articles for article (PubMed ID: 31703556)

  • 1. VARUS: sampling complementary RNA reads from the sequence read archive.
    Stanke M; Bruhn W; Becker F; Hoff KJ
    BMC Bioinformatics; 2019 Nov; 20(1):558. PubMed ID: 31703556
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm.
    Lomsadze A; Burns PD; Borodovsky M
    Nucleic Acids Res; 2014 Sep; 42(15):e119. PubMed ID: 24990371
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis.
    Davidson NM; Oshlack A
    Gigascience; 2018 May; 7(5):. PubMed ID: 29722876
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.
    Banerjee S; Bhandary P; Woodhouse M; Sen TZ; Wise RP; Andorf CM
    BMC Bioinformatics; 2021 Apr; 22(1):205. PubMed ID: 33879057
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Enhancing Structural Annotation of Yeast Genomes with RNA-Seq Data.
    Devillers H; Morin N; Neuvéglise C
    Methods Mol Biol; 2016; 1361():41-56. PubMed ID: 26483014
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing.
    Orabi B; Xie N; McConeghy B; Dong X; Chauve C; Hach F
    Nucleic Acids Res; 2023 Jan; 51(2):e11. PubMed ID: 36478271
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GASS: genome structural annotation for Eukaryotes based on species similarity.
    Wang Y; Chen L; Song N; Lei X
    BMC Genomics; 2015 Mar; 16(1):150. PubMed ID: 25764973
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Grape RNA-Seq analysis pipeline environment.
    Knowles DG; Röder M; Merkel A; Guigó R
    Bioinformatics; 2013 Mar; 29(5):614-21. PubMed ID: 23329413
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CLASS2: accurate and efficient splice variant annotation from RNA-seq reads.
    Song L; Sabunciyan S; Florea L
    Nucleic Acids Res; 2016 Jun; 44(10):e98. PubMed ID: 26975657
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes.
    Ockendon NF; O'Connell LA; Bush SJ; Monzón-Sandoval J; Barnes H; Székely T; Hofmann HA; Dorus S; Urrutia AO
    Mol Ecol Resour; 2016 Mar; 16(2):446-58. PubMed ID: 26358618
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.
    Hoff KJ; Lange S; Lomsadze A; Borodovsky M; Stanke M
    Bioinformatics; 2016 Mar; 32(5):767-9. PubMed ID: 26559507
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences.
    Bao E; Jiang T; Girke T
    Bioinformatics; 2013 May; 29(10):1250-9. PubMed ID: 23493323
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A simple guide to de novo transcriptome assembly and annotation.
    Raghavan V; Kraft L; Mesny F; Rigerte L
    Brief Bioinform; 2022 Mar; 23(2):. PubMed ID: 35076693
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.
    Liu S; Zhang Y; Zhou Z; Waldbieser G; Sun F; Lu J; Zhang J; Jiang Y; Zhang H; Wang X; Rajendran KV; Khoo L; Kucuktas H; Peatman E; Liu Z
    BMC Genomics; 2012 Nov; 13():595. PubMed ID: 23127152
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species.
    Torres-Oliva M; Almudi I; McGregor AP; Posnien N
    BMC Genomics; 2016 May; 17():392. PubMed ID: 27220689
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RES-Scanner: a software package for genome-wide identification of RNA-editing sites.
    Wang Z; Lian J; Li Q; Zhang P; Zhou Y; Zhan X; Zhang G
    Gigascience; 2016 Aug; 5(1):37. PubMed ID: 27538485
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification.
    Zhao S; Zhang B
    BMC Genomics; 2015 Feb; 16(1):97. PubMed ID: 25765860
    [TBL] [Abstract][Full Text] [Related]  

  • 18. AGOUTI: improving genome assembly and annotation using transcriptome data.
    Zhang SV; Zhuo L; Hahn MW
    Gigascience; 2016 Jul; 5(1):31. PubMed ID: 27435057
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A beginner's guide to eukaryotic genome annotation.
    Yandell M; Ence D
    Nat Rev Genet; 2012 Apr; 13(5):329-42. PubMed ID: 22510764
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets.
    Jin Y; Tam OH; Paniagua E; Hammell M
    Bioinformatics; 2015 Nov; 31(22):3593-9. PubMed ID: 26206304
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.